Gm56672 Gene Detail

Summary

• Symbol
  Gm56672
• Name
  predicted gene, 56672

• Feature Type
  lncRNA gene
• IDs
  MGI:7337258
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:58779763-58810376 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  947 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337258	lncRNA gene	Chr19:58779763-58810376 (+)
129S1/SvImJ	ENSMUSG00200015045	lncRNA gene	Chr19:55516922-55519989 (+)
A/J	ENSMUSG00195002670	lncRNA gene	Chr19:55691279-55694346 (+)
AKR/J	ENSMUSG00220018070	lncRNA gene	Chr19:55427362-55430429 (+)
BALB/cJ	ENSMUSG00180019234	lncRNA gene	Chr19:55915403-55918470 (+)
C3H/HeJ	ENSMUSG00175022630	lncRNA gene	Chr19:55453517-55456584 (+)
C57BL/6NJ	ENSMUSG00215029008	lncRNA gene	Chr19:55550171-55553248 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015485	lncRNA gene	Chr19:55106700-55109766 (+)
CBA/J	ENSMUSG00210021725	lncRNA gene	Chr19:55533582-55536649 (+)
DBA/2J	ENSMUSG00185028682	lncRNA gene	Chr19:56031602-56034669 (+)
FVB/NJ	ENSMUSG00205003744	lncRNA gene	Chr19:54947475-54950542 (+)
JF1/MsJ	ENSUMUG00000038707	lncRNA gene	Chr19:56241314-56244381 (+)
LP/J	ENSMUSG00230028036	lncRNA gene	Chr19:56799390-56802457 (+)
NOD/ShiLtJ	ENSMUSG00190013589	lncRNA gene	Chr19:55480676-55483754 (+)
NZO/HlLtJ	ENSMUSG00225025315	lncRNA gene	Chr19:60419010-60422088 (+)
PWK/PhJ	ENSLUMG00010018863	lncRNA gene	Chr19:55298070-55301139 (+)
SPRET/EiJ	ENSMSPG00010003364	lncRNA gene	Chr19:55138478-55141548 (+)
WSB/EiJ	ENSIUOG00005025109	lncRNA gene	Chr19:54901080-54904147 (+)

Homology

• Gene Tree
  Gm56672
  

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120555 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120555	Ensembl Gene Model | MGI Sequence Detail	30614	C57BL/6J
transcript	ENSMUST00000289026	Ensembl | MGI Sequence Detail	727	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56672:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157327	Chr19:58807296-58807336 (+)	27,553 bp