Gm56671 Gene Detail

Summary

• Symbol
  Gm56671
• Name
  predicted gene, 56671

• Feature Type
  lncRNA gene
• IDs
  MGI:7337256
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:36092608-36199108 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337256	lncRNA gene	Chr19:36092608-36199108 (+)
129S1/SvImJ	ENSMUSG00200030939	lncRNA gene	Chr19:32861999-32865645 (+)
A/J	ENSMUSG00195012118	lncRNA gene	Chr19:32982940-32986585 (+)
AKR/J	ENSMUSG00220019350	lncRNA gene	Chr19:32866652-32870331 (+)
BALB/cJ	ENSMUSG00180034631	lncRNA gene	Chr19:33311720-33315367 (+)
C3H/HeJ	ENSMUSG00175043875	lncRNA gene	Chr19:32739010-32742656 (+)
C57BL/6NJ	ENSMUSG00215028360	lncRNA gene	Chr19:32756926-32760564 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016014	lncRNA gene	Chr19:32392196-32395865 (+)
CBA/J	ENSMUSG00210036877	lncRNA gene	Chr19:32818288-32821933 (+)
DBA/2J	ENSMUSG00185035028	lncRNA gene	Chr19:33338460-33342104 (+)
FVB/NJ	ENSMUSG00205008626	lncRNA gene	Chr19:32583282-32586926 (+)
JF1/MsJ	ENSUMUG00000047563	lncRNA gene	Chr19:33469952-33473587 (+)
LP/J	ENSMUSG00230036573	lncRNA gene	Chr19:34149414-34153058 (+)
NOD/ShiLtJ	ENSMUSG00190011366	lncRNA gene	Chr19:32722330-32725975 (+)
NZO/HlLtJ	ENSMUSG00225029647	lncRNA gene	Chr19:37706136-37709802 (+)
PWK/PhJ	ENSLUMG00010001303	lncRNA gene	Chr19:32849636-32853388 (+)
SPRET/EiJ	ENSMSPG00010023541	lncRNA gene	Chr19:32566463-32570115 (+)
WSB/EiJ	ENSIUOG00005039383	lncRNA gene	Chr19:32226176-32229835 (+)

Homology

• Gene Tree
  Gm56671
  

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120701 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120701	Ensembl Gene Model | MGI Sequence Detail	106501	C57BL/6J
transcript	ENSMUST00000245293	Ensembl | MGI Sequence Detail	1674	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56671:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156173	Chr19:36092641-36092652 (+)	39 bp
Tssr5493	Chr19:36095636-36095646 (+)	3,033 bp