Gm56670 Gene Detail

Summary

• Symbol
  Gm56670
• Name
  predicted gene, 56670

• Feature Type
  lncRNA gene
• IDs
  MGI:7337254
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:6110965-6112502 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337254	lncRNA gene	Chr19:6110965-6112502 (-)
129S1/SvImJ	ENSMUSG00200053381	lncRNA gene	Chr19:2873384-2874583 (-)
A/J	ENSMUSG00195053351	lncRNA gene	Chr19:3274045-3275244 (-)
AKR/J	ENSMUSG00220051097	lncRNA gene	Chr19:3047182-3048381 (-)
BALB/cJ	ENSMUSG00180051900	lncRNA gene	Chr19:3648770-3649969 (-)
C3H/HeJ	ENSMUSG00175014146	lncRNA gene	Chr19:2898939-2900138 (-)
C57BL/6NJ	ENSMUSG00215048237	lncRNA gene	Chr19:3111714-3112913 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043487	lncRNA gene	Chr19:3033146-3034345 (-)
CBA/J	ENSMUSG00210050423	lncRNA gene	Chr19:2901657-2902856 (-)
DBA/2J	ENSMUSG00185054094	lncRNA gene	Chr19:3278142-3279341 (-)
FVB/NJ	ENSMUSG00205052677	lncRNA gene	Chr19:3280291-3281490 (-)
JF1/MsJ	ENSUMUG00000056647	lncRNA gene	Chr19:3247201-3248400 (-)
LP/J	ENSMUSG00230054209	lncRNA gene	Chr19:4180268-4181467 (-)
NOD/ShiLtJ	ENSMUSG00190052748	lncRNA gene	Chr19:2808529-2809728 (-)
NZO/HlLtJ	ENSMUSG00225027128	lncRNA gene	Chr19:7889080-7890279 (-)
PWK/PhJ	ENSLUMG00010008151	lncRNA gene	Chr19:3014882-3016081 (-)
SPRET/EiJ	ENSMSPG00010050850	lncRNA gene	Chr19:3008945-3010141 (-)
WSB/EiJ	ENSIUOG00005051505	lncRNA gene	Chr19:2921910-2923109 (-)

Homology

• Gene Tree
  Gm56670
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120982 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120982	Ensembl Gene Model | MGI Sequence Detail	1538	C57BL/6J
transcript	ENSMUST00000246764	Ensembl | MGI Sequence Detail	1538	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56670:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157820	Chr19:6112141-6112186 (-)	338 bp