Gm56669 Gene Detail

Summary

• Symbol
  Gm56669
• Name
  predicted gene, 56669

• Feature Type
  lncRNA gene
• IDs
  MGI:7337252
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:55926886-55927536 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337252	lncRNA gene	Chr19:55926886-55927536 (+)
129S1/SvImJ	ENSMUSG00200015150	lncRNA gene	Chr19:52628417-52629030 (+)
A/J	ENSMUSG00195002569	lncRNA gene	Chr19:52803728-52804341 (+)
AKR/J	ENSMUSG00220017979	lncRNA gene	Chr19:52554932-52555545 (+)
BALB/cJ	ENSMUSG00180020100	lncRNA gene	Chr19:53042828-53043441 (+)
C3H/HeJ	ENSMUSG00175022636	lncRNA gene	Chr19:52578637-52579250 (+)
C57BL/6NJ	ENSMUSG00215026066	lncRNA gene	Chr19:52662877-52663490 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015806	lncRNA gene	Chr19:52214291-52214904 (+)
CBA/J	ENSMUSG00210021324	lncRNA gene	Chr19:52658002-52658615 (+)
DBA/2J	ENSMUSG00185028748	lncRNA gene	Chr19:53156749-53157362 (+)
FVB/NJ	ENSMUSG00205003661	lncRNA gene	Chr19:52038627-52039240 (+)
JF1/MsJ	ENSUMUG00000041226	lncRNA gene	Chr19:53340938-53341546 (+)
LP/J	ENSMUSG00230027971	lncRNA gene	Chr19:53909915-53910528 (+)
NOD/ShiLtJ	ENSMUSG00190013610	lncRNA gene	Chr19:52530852-52531465 (+)
NZO/HlLtJ	ENSMUSG00225025482	lncRNA gene	Chr19:57515601-57516214 (+)
PWK/PhJ	ENSLUMG00010019000	lncRNA gene	Chr19:52398191-52398799 (+)
SPRET/EiJ	ENSMSPG00010003557	lncRNA gene	Chr19:52257695-52258308 (+)
WSB/EiJ	ENSIUOG00005025955	lncRNA gene	Chr19:52016290-52016903 (+)

Homology

• Gene Tree
  Gm56669
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120932 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120932	Ensembl Gene Model | MGI Sequence Detail	651	C57BL/6J
transcript	ENSMUST00000246548	Ensembl | MGI Sequence Detail	626	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56669:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157170	Chr19:55926918-55926932 (+)	39 bp