Gm56665 Gene Detail

Summary

• Symbol
  Gm56665
• Name
  predicted gene, 56665

• Feature Type
  lncRNA gene
• IDs
  MGI:7337244
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11474928-11475656 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337244	lncRNA gene	Chr19:11474928-11475656 (+)
129S1/SvImJ	ENSMUSG00200053401	lncRNA gene	Chr19:8154936-8155664 (+)
A/J	ENSMUSG00195053744	lncRNA gene	Chr19:8359296-8360024 (+)
AKR/J	ENSMUSG00220051663	lncRNA gene	Chr19:8270056-8270784 (+)
BALB/cJ	ENSMUSG00180052643	lncRNA gene	Chr19:8723872-8724600 (+)
C3H/HeJ	ENSMUSG00175014730	lncRNA gene	Chr19:8000622-8001350 (+)
C57BL/6NJ	ENSMUSG00215048551	lncRNA gene	Chr19:8072242-8072970 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044799	lncRNA gene	Chr19:7853882-7854610 (+)
CBA/J	ENSMUSG00210050733	lncRNA gene	Chr19:8199143-8199871 (+)
DBA/2J	ENSMUSG00185053476	lncRNA gene	Chr19:8609163-8609891 (+)
FVB/NJ	ENSMUSG00205053545	lncRNA gene	Chr19:8066039-8066767 (+)
JF1/MsJ	ENSUMUG00000056604	lncRNA gene	Chr19:8728383-8729081 (+)
LP/J	ENSMUSG00230054269	lncRNA gene	Chr19:9529512-9530240 (+)
NOD/ShiLtJ	ENSMUSG00190053050	lncRNA gene	Chr19:7821944-7822672 (+)
NZO/HlLtJ	ENSMUSG00225047336	lncRNA gene	Chr19:13238435-13239163 (+)
PWK/PhJ	ENSLUMG00010009178	lncRNA gene	Chr19:8129538-8130238 (+)
SPRET/EiJ	ENSMSPG00010051492	lncRNA gene	Chr19:7953622-7954348 (+)
WSB/EiJ	ENSIUOG00005051549	lncRNA gene	Chr19:7696014-7696742 (+)

Homology

• Gene Tree
  Gm56665
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56665
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120890 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120890	Ensembl Gene Model | MGI Sequence Detail	729	C57BL/6J
transcript	ENSMUST00000246323	Ensembl | MGI Sequence Detail	729	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm56665:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155247	Chr19:11474921-11474935 (+)	0 bp
Tssr155248	Chr19:11474939-11474944 (+)	14 bp