Gm56664 Gene Detail

Summary

• Symbol
  Gm56664
• Name
  predicted gene, 56664

• Feature Type
  lncRNA gene
• IDs
  MGI:7337242
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:24655542-24657995 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337242	lncRNA gene	Chr19:24655542-24657995 (-)
129S1/SvImJ	ENSMUSG00200021152	lncRNA gene	Chr19:21384575-21385170 (-)
A/J	ENSMUSG00195036372	lncRNA gene	Chr19:21519882-21520473 (-)
AKR/J	ENSMUSG00220020318	lncRNA gene	Chr19:21539249-21539840 (-)
BALB/cJ	ENSMUSG00180014056	lncRNA gene	Chr19:21870834-21871420 (-)
C3H/HeJ	ENSMUSG00175025843	lncRNA gene	Chr19:21242323-21242910 (-)
C57BL/6NJ	ENSMUSG00215026304	lncRNA gene	Chr19:21266176-21266773 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018631	lncRNA gene	Chr19:21128811-21129401 (-)
CBA/J	ENSMUSG00210015116	lncRNA gene	Chr19:21473407-21473992 (-)
DBA/2J	ENSMUSG00185026408	lncRNA gene	Chr19:21859973-21860562 (-)
FVB/NJ	ENSMUSG00205013481	lncRNA gene	Chr19:21291071-21291662 (-)
JF1/MsJ	ENSUMUG00000040325	lncRNA gene	Chr19:22071337-22071904 (-)
LP/J	ENSMUSG00230029161	lncRNA gene	Chr19:22694397-22694994 (-)
NOD/ShiLtJ	ENSMUSG00190021909	lncRNA gene	Chr19:21231965-21232542 (-)
NZO/HlLtJ	ENSMUSG00225034357	lncRNA gene	Chr19:26445261-26445858 (-)
PWK/PhJ	ENSLUMG00010035860	lncRNA gene	Chr19:21415619-21416200 (-)
SPRET/EiJ	ENSMSPG00010037095	lncRNA gene	Chr19:21429823-21430399 (-)
WSB/EiJ	ENSIUOG00005028784	lncRNA gene	Chr19:20948858-20949447 (-)

Homology

• Gene Tree
  Gm56664
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120881 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120881	Ensembl Gene Model | MGI Sequence Detail	2454	C57BL/6J
transcript	ENSMUST00000246268	Ensembl | MGI Sequence Detail	2454	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56664:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158681	Chr19:24656122-24656135 (-)	1,866 bp
Tssr158680	Chr19:24655983-24656006 (-)	2,000 bp