Gm56663 Gene Detail

Summary

• Symbol
  Gm56663
• Name
  predicted gene, 56663

• Feature Type
  lncRNA gene
• IDs
  MGI:7337240
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr19:11370203-11370687 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337240	lncRNA gene	Chr19:11370203-11370687 (+)
129S1/SvImJ	ENSMUSG00200052424	lncRNA gene	Chr19:8049909-8050679 (+)
A/J	ENSMUSG00195054164	lncRNA gene	Chr19:8254250-8255024 (+)
AKR/J	ENSMUSG00220050012	lncRNA gene	Chr19:8165019-8165791 (+)
BALB/cJ	ENSMUSG00180051197	lncRNA gene	Chr19:8618839-8619613 (+)
C3H/HeJ	ENSMUSG00175014050	lncRNA gene	Chr19:7895608-7896380 (+)
C57BL/6NJ	ENSMUSG00215048900	lncRNA gene	Chr19:7967217-7967989 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043468	lncRNA gene	Chr19:7750073-7750485 (+)
CBA/J	ENSMUSG00210050949	lncRNA gene	Chr19:8094143-8094913 (+)
DBA/2J	ENSMUSG00185053335	lncRNA gene	Chr19:8504162-8504934 (+)
FVB/NJ	ENSMUSG00205052864	lncRNA gene	Chr19:7962001-7962330 (+)
JF1/MsJ	ENSUMUG00000056841	lncRNA gene	Chr19:8630740-8631112 (+)
LP/J	ENSMUSG00230054402	lncRNA gene	Chr19:9424490-9425262 (+)
NOD/ShiLtJ	ENSMUSG00190051739	lncRNA gene	Chr19:7716923-7717697 (+)
NZO/HlLtJ	ENSMUSG00225047416	lncRNA gene	Chr19:13133414-13134186 (+)
PWK/PhJ	ENSLUMG00010009158	lncRNA gene	Chr19:8031829-8032204 (+)
SPRET/EiJ	ENSMSPG00010051376	lncRNA gene	Chr19:7839380-7839708 (+)
WSB/EiJ	ENSIUOG00005050723	lncRNA gene	Chr19:7624084-7624862 (+)

Homology

• Gene Tree
  Gm56663
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56663
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120878 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120878	Ensembl Gene Model | MGI Sequence Detail	485	C57BL/6J
transcript	ENSMUST00000246257	Ensembl | MGI Sequence Detail	485	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm56663:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155196	Chr19:11370027-11370043 (+)	-168 bp
Tssr155197	Chr19:11370050-11370056 (+)	-150 bp
Tssr155198	Chr19:11370063-11370083 (+)	-130 bp
Tssr155199	Chr19:11370096-11370108 (+)	-101 bp
Tssr155200	Chr19:11370150-11370157 (+)	-49 bp
Tssr155201	Chr19:11370173-11370185 (+)	-24 bp