Gm56657 Gene Detail

Summary

• Symbol
  Gm56657
• Name
  predicted gene, 56657

• Feature Type
  lncRNA gene
• IDs
  MGI:7337228
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11364114-11365137 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337228	lncRNA gene	Chr19:11364114-11365137 (-)
129S1/SvImJ	ENSMUSG00200052674	lncRNA gene	Chr19:8043817-8044840 (-)
A/J	ENSMUSG00195053787	lncRNA gene	Chr19:8248158-8249181 (-)
AKR/J	ENSMUSG00220051428	lncRNA gene	Chr19:8158927-8159950 (-)
BALB/cJ	ENSMUSG00180051495	lncRNA gene	Chr19:8612747-8613770 (-)
C3H/HeJ	ENSMUSG00175015408	lncRNA gene	Chr19:7889516-7890539 (-)
C57BL/6NJ	ENSMUSG00215047345	lncRNA gene	Chr19:7961125-7962148 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043457	lncRNA gene	Chr19:7743960-7744971 (-)
CBA/J	ENSMUSG00210050495	lncRNA gene	Chr19:8088051-8089074 (-)
DBA/2J	ENSMUSG00185053914	lncRNA gene	Chr19:8498070-8499093 (-)
FVB/NJ	ENSMUSG00205052847	lncRNA gene	Chr19:7955934-7956956 (-)
JF1/MsJ	ENSUMUG00000056839	lncRNA gene	Chr19:8624630-8625653 (-)
LP/J	ENSMUSG00230054261	lncRNA gene	Chr19:9418398-9419421 (-)
NOD/ShiLtJ	ENSMUSG00190052781	lncRNA gene	Chr19:7710832-7711855 (-)
NZO/HlLtJ	ENSMUSG00225047270	lncRNA gene	Chr19:13127322-13128345 (-)
PWK/PhJ	ENSLUMG00010009152	lncRNA gene	Chr19:8025730-8026753 (-)
SPRET/EiJ	ENSMSPG00010051372	lncRNA gene	Chr19:7833311-7834335 (-)
WSB/EiJ	ENSIUOG00005051328	lncRNA gene	Chr19:7617980-7619003 (-)

Homology

• Gene Tree
  Gm56657
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56657
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120733 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120733	Ensembl Gene Model | MGI Sequence Detail	1024	C57BL/6J
transcript	ENSMUST00000245463	Ensembl | MGI Sequence Detail	1024	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm56657:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158344	Chr19:11365127-11365143 (-)	2 bp
Tssr158343	Chr19:11365105-11365116 (-)	26 bp