Gm56655 Gene Detail

Summary

• Symbol
  Gm56655
• Name
  predicted gene, 56655

• Feature Type
  lncRNA gene
• IDs
  MGI:7337224
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:5456436-5456767 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337224	lncRNA gene	Chr19:5456436-5456767 (-)
129S1/SvImJ	ENSMUSG00200052440	lncRNA gene	Chr19:2218351-2218572 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215047119	lncRNA gene	Chr19:2456551-2456772 (-)
C57BL/6NJ	ENSMUSG00215022538	lncRNA gene	Chr16:94813528-94813765 (+)
C57BL/6NJ	ENSMUSG00215022504	lncRNA gene	Chr16:94810706-94810943 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210050197	lncRNA gene	Chr19:2239925-2240146 (-)
DBA/2J	ENSMUSG00185003610	lncRNA gene	Chr16:94850832-94851069 (+)
DBA/2J	ENSMUSG00185010616	lncRNA gene	Chr13:86253676-86253909 (+)
DBA/2J	ENSMUSG00185003614	lncRNA gene	Chr16:94853654-94853891 (+)
DBA/2J	ENSMUSG00185052806	lncRNA gene	Chr19:2616386-2616607 (-)
FVB/NJ	ENSMUSG00205053307	lncRNA gene	Chr19:2619988-2620209 (-)
FVB/NJ	ENSMUSG00205053664	lncRNA gene	Chr19:2624664-2624885 (-)
FVB/NJ	ENSMUSG00205016135	lncRNA gene	Chr16:94684910-94685147 (+)
FVB/NJ	ENSMUSG00205016116	lncRNA gene	Chr16:94682088-94682325 (+)
FVB/NJ	ENSMUSG00205009101	lncRNA gene	Chr13:82009858-82010091 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230054327	lncRNA gene	Chr19:3525267-3525488 (-)
LP/J	ENSMUSG00230028923	lncRNA gene	Chr16:97388274-97388511 (+)
LP/J	ENSMUSG00230004798	lncRNA gene	Chr13:96284037-96284270 (+)
LP/J	ENSMUSG00230028922	lncRNA gene	Chr16:97385452-97385689 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225026919	lncRNA gene	Chr19:7234042-7234263 (-)
NZO/HlLtJ	ENSMUSG00225031084	lncRNA gene	Chr13:88801230-88801463 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051959	lncRNA gene	Chr19:2256494-2256715 (-)
WSB/EiJ	ENSIUOG00005050761	lncRNA gene	Chr19:2251818-2252039 (-)
WSB/EiJ	ENSIUOG00005003300	lncRNA gene	Chr3:74969933-74970151 (-)
WSB/EiJ	ENSIUOG00005003297	lncRNA gene	Chr3:74965311-74965529 (-)

Homology

• Gene Tree
  Gm56655
  

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000120167 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120167	Ensembl Gene Model | MGI Sequence Detail	332	C57BL/6J
transcript	ENSMUST00000241718	Ensembl | MGI Sequence Detail	332	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56655:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157589	Chr19:5458460-5458496 (-)	-1,711 bp
Tssr157588	Chr19:5456629-5456634 (-)	135 bp