Gm56654 Gene Detail

Summary

• Symbol
  Gm56654
• Name
  predicted gene, 56654

• Feature Type
  lncRNA gene
• IDs
  MGI:7337222
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:5067464-5074397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  277 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337222	lncRNA gene	Chr19:5067464-5074397 (-)
129S1/SvImJ	ENSMUSG00200053482	lncRNA gene	Chr19:1833488-1834372 (-)
A/J	ENSMUSG00195053050	lncRNA gene	Chr19:2229008-2229892 (-)
AKR/J	ENSMUSG00220050200	lncRNA gene	Chr19:2002086-2002970 (-)
BALB/cJ	ENSMUSG00180052558	lncRNA gene	Chr19:2603731-2604616 (-)
C3H/HeJ	ENSMUSG00175015118	lncRNA gene	Chr19:1848455-1849339 (-)
C57BL/6NJ	ENSMUSG00215047518	lncRNA gene	Chr19:2071664-2072548 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044107	lncRNA gene	Chr19:1992335-1993209 (-)
CBA/J	ENSMUSG00210050367	lncRNA gene	Chr19:1852306-1853189 (-)
DBA/2J	ENSMUSG00185052412	lncRNA gene	Chr19:2228778-2229661 (-)
FVB/NJ	ENSMUSG00205052458	lncRNA gene	Chr19:2232014-2232903 (-)
JF1/MsJ	ENSUMUG00000056319	lncRNA gene	Chr19:2211852-2212729 (-)
LP/J	ENSMUSG00230054315	lncRNA gene	Chr19:3140436-3141320 (-)
NOD/ShiLtJ	ENSMUSG00190052688	lncRNA gene	Chr19:1763499-1764383 (-)
NZO/HlLtJ	ENSMUSG00225026879	lncRNA gene	Chr19:6849185-6850068 (-)
PWK/PhJ	ENSLUMG00010008958	lncRNA gene	Chr19:1984405-1985295 (-)
SPRET/EiJ	ENSMSPG00010050924	lncRNA gene	Chr19:1975386-1976274 (-)
WSB/EiJ	ENSIUOG00005051218	lncRNA gene	Chr19:1863524-1864413 (-)

Homology

• Gene Tree
  Gm56654
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  24
• Gene trapped
  24
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120690 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120690	Ensembl Gene Model | MGI Sequence Detail	6934	C57BL/6J
transcript	ENSMUST00000245195	Ensembl | MGI Sequence Detail	1308	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56654:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157539	Chr19:5073954-5074007 (-)	416 bp