Gm56653 Gene Detail

Summary

• Symbol
  Gm56653
• Name
  predicted gene, 56653

• Feature Type
  lncRNA gene
• IDs
  MGI:7337220
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:7242541-7243794 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337220	lncRNA gene	Chr19:7242541-7243794 (+)
129S1/SvImJ	ENSMUSG00200052809	lncRNA gene	Chr19:3968084-3969240 (+)
A/J	ENSMUSG00195053250	lncRNA gene	Chr19:4369998-4371154 (+)
AKR/J	ENSMUSG00220050444	lncRNA gene	Chr19:4139384-4140540 (+)
BALB/cJ	ENSMUSG00180051754	lncRNA gene	Chr19:4733525-4734681 (+)
C3H/HeJ	ENSMUSG00175015606	lncRNA gene	Chr19:3989999-3991155 (+)
C57BL/6NJ	ENSMUSG00215047986	lncRNA gene	Chr19:4208518-4209674 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043627	lncRNA gene	Chr19:4110107-4111278 (+)
CBA/J	ENSMUSG00210050661	lncRNA gene	Chr19:3992933-3994089 (+)
DBA/2J	ENSMUSG00185052398	lncRNA gene	Chr19:4369410-4370566 (+)
FVB/NJ	ENSMUSG00205053430	lncRNA gene	Chr19:4367542-4368698 (+)
JF1/MsJ	ENSUMUG00000056682	lncRNA gene	Chr19:4329720-4330907 (+)
LP/J	ENSMUSG00230054204	lncRNA gene	Chr19:5294802-5295958 (+)
NOD/ShiLtJ	ENSMUSG00190053432	lncRNA gene	Chr19:3901263-3902419 (+)
NZO/HlLtJ	ENSMUSG00225027115	lncRNA gene	Chr19:9003625-9004781 (+)
PWK/PhJ	ENSLUMG00010008476	lncRNA gene	Chr19:4093428-4094603 (+)
SPRET/EiJ	ENSMSPG00010050601	lncRNA gene	Chr19:4090815-4091972 (+)
WSB/EiJ	ENSIUOG00005051801	lncRNA gene	Chr19:4007157-4008313 (+)

Homology

• Gene Tree
  Gm56653
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120626 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120626	Ensembl Gene Model | MGI Sequence Detail	1254	C57BL/6J
transcript	ENSMUST00000244680	Ensembl | MGI Sequence Detail	1254	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56653:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154740	Chr19:7242536-7242547 (+)	1 bp