Gm56649 Gene Detail

Summary

• Symbol
  Gm56649
• Name
  predicted gene, 56649

• Feature Type
  lncRNA gene
• IDs
  MGI:7337212
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:5862385-5863291 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337212	lncRNA gene	Chr19:5862385-5863291 (+)
129S1/SvImJ	ENSMUSG00200053384	lncRNA gene	Chr19:2624802-2625708 (+)
A/J	ENSMUSG00195053951	lncRNA gene	Chr19:3020110-3021016 (+)
AKR/J	ENSMUSG00220050826	lncRNA gene	Chr19:2793234-2794140 (+)
BALB/cJ	ENSMUSG00180051578	lncRNA gene	Chr19:3394819-3395725 (+)
C3H/HeJ	ENSMUSG00175014696	lncRNA gene	Chr19:2645012-2645918 (+)
C57BL/6NJ	ENSMUSG00215047180	lncRNA gene	Chr19:2863099-2864005 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043948	lncRNA gene	Chr19:2781556-2782461 (+)
CBA/J	ENSMUSG00210050640	lncRNA gene	Chr19:2647792-2648698 (+)
DBA/2J	ENSMUSG00185053423	lncRNA gene	Chr19:3024281-3025187 (+)
FVB/NJ	ENSMUSG00205053239	lncRNA gene	Chr19:3030480-3031387 (+)
JF1/MsJ	ENSUMUG00000056954	lncRNA gene	Chr19:3000168-3001076 (+)
LP/J	ENSMUSG00230054330	lncRNA gene	Chr19:3931691-3932597 (+)
NOD/ShiLtJ	ENSMUSG00190051874	lncRNA gene	Chr19:2554614-2555520 (+)
NZO/HlLtJ	ENSMUSG00225026928	lncRNA gene	Chr19:7640503-7641409 (+)
PWK/PhJ	ENSLUMG00010008205	lncRNA gene	Chr19:2766407-2767510 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051900	lncRNA gene	Chr19:2662676-2663584 (+)

Homology

• Gene Tree
  Gm56649
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120562 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120562	Ensembl Gene Model | MGI Sequence Detail	907	C57BL/6J
transcript	ENSMUST00000244181	Ensembl | MGI Sequence Detail	907	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154509	Chr19:5862411-5862427 (+)	34 bp