Gm56647 Gene Detail

Summary

• Symbol
  Gm56647
• Name
  predicted gene, 56647

• Feature Type
  lncRNA gene
• IDs
  MGI:7337208
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:14575816-14579487 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337208	lncRNA gene	Chr19:14575816-14579487 (+)
129S1/SvImJ	ENSMUSG00200021213	lncRNA gene	Chr19:11266300-11267710 (+)
A/J	ENSMUSG00195018210	lncRNA gene	Chr19:11406362-11407772 (+)
AKR/J	ENSMUSG00220010777	lncRNA gene	Chr19:11387235-11388643 (+)
BALB/cJ	ENSMUSG00180018772	lncRNA gene	Chr19:11768831-11770241 (+)
C3H/HeJ	ENSMUSG00175003781	lncRNA gene	Chr19:11120460-11121869 (+)
C57BL/6NJ	ENSMUSG00215024518	lncRNA gene	Chr19:11179517-11180930 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008793	lncRNA gene	Chr19:11033452-11034883 (+)
CBA/J	ENSMUSG00210012944	lncRNA gene	Chr19:11318912-11320321 (+)
DBA/2J	ENSMUSG00185013808	lncRNA gene	Chr19:11728223-11729633 (+)
FVB/NJ	ENSMUSG00205004500	lncRNA gene	Chr19:11168899-11170314 (+)
JF1/MsJ	ENSUMUG00000035972	lncRNA gene	Chr19:11973011-11974449 (+)
LP/J	ENSMUSG00230022216	lncRNA gene	Chr19:12636028-12637438 (+)
NOD/ShiLtJ	ENSMUSG00190020371	lncRNA gene	Chr19:11130730-11132140 (+)
NZO/HlLtJ	ENSMUSG00225047011	lncRNA gene	Chr19:16345343-16346754 (+)
PWK/PhJ	ENSLUMG00010009023	lncRNA gene	Chr19:11291103-11292534 (+)
SPRET/EiJ	ENSMSPG00010019921	lncRNA gene	Chr19:11198292-11199749 (+)
WSB/EiJ	ENSIUOG00005007233	lncRNA gene	Chr19:10835757-10837171 (+)

Homology

• Gene Tree
  Gm56647
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120068 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120068	Ensembl Gene Model | MGI Sequence Detail	3672	C57BL/6J
transcript	ENSMUST00000241218	Ensembl | MGI Sequence Detail	3672	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56647:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155371	Chr19:14575886-14575937 (+)	96 bp