Gm56644 Gene Detail

Summary

• Symbol
  Gm56644
• Name
  predicted gene, 56644

• Feature Type
  lncRNA gene
• IDs
  MGI:7337202
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr19:61139973-61239923 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1101 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337202	lncRNA gene	Chr19:61139973-61239923 (+)
129S1/SvImJ	ENSMUSG00200015345	lncRNA gene	Chr19:57839591-57840321 (+)
A/J	ENSMUSG00195002617	lncRNA gene	Chr19:58018245-58018975 (+)
AKR/J	ENSMUSG00220017972	lncRNA gene	Chr19:57771855-57772585 (+)
BALB/cJ	ENSMUSG00180019788	lncRNA gene	Chr19:58262442-58263172 (+)
C3H/HeJ	ENSMUSG00175022575	lncRNA gene	Chr19:57803353-57804083 (+)
C57BL/6NJ	ENSMUSG00215028012	lncRNA gene	Chr19:57876698-57877423 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015784	lncRNA gene	Chr19:57435348-57436078 (+)
CBA/J	ENSMUSG00210021363	lncRNA gene	Chr19:57883295-57884025 (+)
DBA/2J	ENSMUSG00185028731	lncRNA gene	Chr19:58379238-58379968 (+)
FVB/NJ	ENSMUSG00205003689	lncRNA gene	Chr19:57266889-57267619 (+)
JF1/MsJ	ENSUMUG00000038042	lncRNA gene	Chr19:58575385-58576110 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014179	lncRNA gene	Chr19:57805013-57805743 (+)
NZO/HlLtJ	ENSMUSG00225021120	lncRNA gene	Chr19:62745167-62745892 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010003493	lncRNA gene	Chr19:57455130-57455860 (+)
WSB/EiJ	ENSIUOG00005025145	lncRNA gene	Chr19:57223825-57224555 (+)

Homology

• Gene Tree
  Gm56644
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000120514 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120514	Ensembl Gene Model | MGI Sequence Detail	99951	C57BL/6J
transcript	ENSMUST00000333529	Ensembl | MGI Sequence Detail	2649	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56644:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157370	Chr19:61140041-61140056 (+)	76 bp
Tssr157374	Chr19:61212835-61212878 (+)	72,884 bp
Tssr157375	Chr19:61212909-61212921 (+)	72,942 bp
Tssr157376	Chr19:61212951-61212983 (+)	72,994 bp
Tssr157377	Chr19:61212990-61213048 (+)	73,046 bp
Tssr157378	Chr19:61213111-61213122 (+)	73,144 bp
Tssr157379	Chr19:61213144-61213200 (+)	73,199 bp
Tssr157380	Chr19:61215930-61215941 (+)	75,963 bp
Tssr157381	Chr19:61216195-61216199 (+)	76,224 bp