Gm56641 Gene Detail

Summary

• Symbol
  Gm56641
• Name
  predicted gene, 56641

• Feature Type
  lncRNA gene
• IDs
  MGI:7337196
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:32689295-32722912 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337196	lncRNA gene	Chr19:32689295-32722912 (+)
129S1/SvImJ	ENSMUSG00200020767	lncRNA gene	Chr19:29410535-29411248 (+)
A/J	ENSMUSG00195036684	lncRNA gene	Chr19:29579421-29580134 (+)
AKR/J	ENSMUSG00220019734	lncRNA gene	Chr19:29636079-29636792 (+)
BALB/cJ	ENSMUSG00180013803	lncRNA gene	Chr19:29908342-29909055 (+)
C3H/HeJ	ENSMUSG00175025402	lncRNA gene	Chr19:29297030-29297743 (+)
C57BL/6NJ	ENSMUSG00215027143	lncRNA gene	Chr19:29328960-29329673 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018329	lncRNA gene	Chr19:29149521-29150228 (+)
CBA/J	ENSMUSG00210014977	lncRNA gene	Chr19:29540433-29541146 (+)
DBA/2J	ENSMUSG00185026082	lncRNA gene	Chr19:29912449-29913162 (+)
FVB/NJ	ENSMUSG00205012993	lncRNA gene	Chr19:29311823-29312534 (+)
JF1/MsJ	ENSUMUG00000039398	lncRNA gene	Chr19:30161268-30161985 (+)
LP/J	ENSMUSG00230035614	lncRNA gene	Chr19:30696848-30697561 (+)
NOD/ShiLtJ	ENSMUSG00190022939	lncRNA gene	Chr19:29278943-29279656 (+)
NZO/HlLtJ	ENSMUSG00225029844	lncRNA gene	Chr19:34475345-34476058 (+)
PWK/PhJ	ENSLUMG00010034659	lncRNA gene	Chr19:29531057-29531774 (+)
SPRET/EiJ	ENSMSPG00010037480	lncRNA gene	Chr19:29504727-29505429 (+)
WSB/EiJ	ENSIUOG00005029190	lncRNA gene	Chr19:28989630-28990343 (+)

Homology

• Gene Tree
  Gm56641
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000120470 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120470	Ensembl Gene Model | MGI Sequence Detail	33618	C57BL/6J
transcript	ENSMUST00000266037	Ensembl | MGI Sequence Detail	1329	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56641:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155989	Chr19:32689780-32689817 (+)	504 bp
Tssr155990	Chr19:32704699-32704708 (+)	15,409 bp