Gm56629 Gene Detail

Summary

• Symbol
  Gm56629
• Name
  predicted gene, 56629

• Feature Type
  lncRNA gene
• IDs
  MGI:7337172
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:93770651-93771349 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337172	lncRNA gene	Chr16:93770651-93771349 (+)
129S1/SvImJ	ENSMUSG00200038474	lncRNA gene	Chr16:90705712-90706366 (+)
A/J	ENSMUSG00195029501	lncRNA gene	Chr16:90463438-90464092 (+)
AKR/J	ENSMUSG00220016208	lncRNA gene	Chr16:90708753-90709407 (+)
BALB/cJ	ENSMUSG00180015849	lncRNA gene	Chr16:90537428-90538082 (+)
C3H/HeJ	ENSMUSG00175017101	lncRNA gene	Chr16:90874559-90875213 (+)
C57BL/6NJ	ENSMUSG00215035764	lncRNA gene	Chr16:90661057-90661711 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020768	lncRNA gene	Chr16:90262639-90263302 (+)
CBA/J	ENSMUSG00210043201	lncRNA gene	Chr16:90782088-90782742 (+)
DBA/2J	ENSMUSG00185036575	lncRNA gene	Chr16:90721511-90722165 (+)
FVB/NJ	ENSMUSG00205026135	lncRNA gene	Chr16:90501010-90501664 (+)
JF1/MsJ	ENSUMUG00000044198	lncRNA gene	Chr16:90868191-90868862 (+)
LP/J	ENSMUSG00230028491	lncRNA gene	Chr16:93252310-93252964 (+)
NOD/ShiLtJ	ENSMUSG00190028526	lncRNA gene	Chr16:90689993-90690647 (+)
NZO/HlLtJ	ENSMUSG00225031781	lncRNA gene	Chr16:96367830-96368484 (+)
PWK/PhJ	ENSLUMG00010014033	lncRNA gene	Chr16:90505169-90505841 (+)
SPRET/EiJ	ENSMSPG00010021616	lncRNA gene	Chr16:91617056-91617730 (+)
WSB/EiJ	ENSIUOG00005021410	lncRNA gene	Chr16:90610321-90610975 (+)

Homology

• Gene Tree
  Gm56629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm56629
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121032	Ensembl Gene Model | MGI Sequence Detail	699	C57BL/6J
transcript	ENSMUST00000246938	Ensembl | MGI Sequence Detail	699	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:343786 Lana-Elola E, et al., Congenital heart defects in Down syndrome are caused by increased dosage of DYRK1A. bioRxiv. 2023;
• Latest
  J:345472 Lana-Elola E, et al., Increased dosage of DYRK1A leads to congenital heart defects in a mouse model of Down syndrome. Sci Transl Med. 2024 Jan 24;16(731):eadd6883

TSS for Gm56629:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139534	Chr16:93770651-93770685 (+)	17 bp