Gm56628 Gene Detail

Summary

• Symbol
  Gm56628
• Name
  predicted gene, 56628

• Feature Type
  lncRNA gene
• IDs
  MGI:7337170
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:25342171-25342265 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337170	lncRNA gene	Chr16:25342171-25342265 (+)
129S1/SvImJ	ENSMUSG00200036147	lncRNA gene	Chr16:22341310-22341404 (+)
A/J	ENSMUSG00195029483	lncRNA gene	Chr16:21895893-21895987 (+)
AKR/J	ENSMUSG00220033891	lncRNA gene	Chr16:22215403-22215497 (+)
BALB/cJ	ENSMUSG00180030448	lncRNA gene	Chr16:22136528-22136622 (+)
C3H/HeJ	ENSMUSG00175040875	lncRNA gene	Chr16:22289995-22290089 (+)
C57BL/6NJ	ENSMUSG00215021926	lncRNA gene	Chr16:22014079-22014173 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038437	lncRNA gene	Chr16:22622916-22622998 (+)
CBA/J	ENSMUSG00210039757	lncRNA gene	Chr16:22311526-22311620 (+)
DBA/2J	ENSMUSG00185020172	lncRNA gene	Chr16:22250434-22250528 (+)
FVB/NJ	ENSMUSG00205025207	lncRNA gene	Chr16:22241885-22241979 (+)
JF1/MsJ	ENSUMUG00000040911	lncRNA gene	Chr16:22490096-22490190 (+)
LP/J	ENSMUSG00230034196	lncRNA gene	Chr16:24820553-24820647 (+)
NOD/ShiLtJ	ENSMUSG00190034303	lncRNA gene	Chr16:22378114-22378208 (+)
NZO/HlLtJ	ENSMUSG00225039316	lncRNA gene	Chr16:28071648-28071742 (+)
PWK/PhJ	ENSLUMG00010035635	lncRNA gene	Chr16:22296851-22296945 (+)
SPRET/EiJ	ENSMSPG00010020005	lncRNA gene	Chr16:22219751-22219845 (+)
WSB/EiJ	ENSIUOG00005034572	lncRNA gene	Chr16:22516914-22517008 (+)

Homology

• Gene Tree
  Gm56628
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120989 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120989	Ensembl Gene Model | MGI Sequence Detail	95	C57BL/6J
transcript	ENSMUST00000246785	Ensembl | MGI Sequence Detail	95	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56628:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137796	Chr16:25342138-25342143 (+)	-30 bp