Gm56627 Gene Detail

Summary

• Symbol
  Gm56627
• Name
  predicted gene, 56627

• Feature Type
  lncRNA gene
• IDs
  MGI:7337168
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:23807089-23807291 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337168	lncRNA gene	Chr16:23807089-23807291 (-)
129S1/SvImJ	ENSMUSG00200036655	lncRNA gene	Chr16:20811193-20811395 (-)
A/J	ENSMUSG00195029215	lncRNA gene	Chr16:20365782-20365984 (-)
AKR/J	ENSMUSG00220033008	lncRNA gene	Chr16:20685212-20685414 (-)
BALB/cJ	ENSMUSG00180030127	lncRNA gene	Chr16:20606358-20606560 (-)
C3H/HeJ	ENSMUSG00175039287	lncRNA gene	Chr16:20759996-20760198 (-)
C57BL/6NJ	ENSMUSG00215026971	lncRNA gene	Chr16:20478452-20478654 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036604	lncRNA gene	Chr16:21082168-21082371 (-)
CBA/J	ENSMUSG00210037834	lncRNA gene	Chr16:20781646-20781848 (-)
DBA/2J	ENSMUSG00185020076	lncRNA gene	Chr16:20720435-20720637 (-)
FVB/NJ	ENSMUSG00205027307	lncRNA gene	Chr16:20712420-20712622 (-)
JF1/MsJ	ENSUMUG00000038603	lncRNA gene	Chr16:20946168-20946370 (-)
LP/J	ENSMUSG00230034296	lncRNA gene	Chr16:23290602-23290804 (-)
NOD/ShiLtJ	ENSMUSG00190034731	lncRNA gene	Chr16:20853056-20853258 (-)
NZO/HlLtJ	ENSMUSG00225039321	lncRNA gene	Chr16:26541838-26542040 (-)
PWK/PhJ	ENSLUMG00010033657	lncRNA gene	Chr16:20756221-20756423 (-)
SPRET/EiJ	ENSMSPG00010019591	lncRNA gene	Chr16:20653849-20654052 (-)
WSB/EiJ	ENSIUOG00005034701	lncRNA gene	Chr16:20972846-20973049 (-)

Homology

• Gene Tree
  Gm56627
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120947 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120947	Ensembl Gene Model | MGI Sequence Detail	203	C57BL/6J
transcript	ENSMUST00000246612	Ensembl | MGI Sequence Detail	203	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56627:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140580	Chr16:23807375-23807391 (-)	-92 bp
Tssr140579	Chr16:23807350-23807357 (-)	-63 bp
Tssr140578	Chr16:23807313-23807324 (-)	-28 bp
Tssr140577	Chr16:23807287-23807294 (-)	0 bp