Gm56620 Gene Detail

Summary

• Symbol
  Gm56620
• Name
  predicted gene, 56620

• Feature Type
  lncRNA gene
• IDs
  MGI:7337154
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr16:71824326-72159091 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11462 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337154	lncRNA gene	Chr16:71824326-72159091 (+)
129S1/SvImJ	ENSMUSG00200008554	lncRNA gene	Chr16:68690477-68692743 (+)
A/J	ENSMUSG00195001629	lncRNA gene	Chr16:68441713-68443981 (+)
AKR/J	ENSMUSG00220005761	lncRNA gene	Chr16:68625281-68627555 (+)
BALB/cJ	ENSMUSG00180001705	lncRNA gene	Chr16:68540372-68542640 (+)
C3H/HeJ	ENSMUSG00175004667	lncRNA gene	Chr16:68811952-68814220 (+)
C57BL/6NJ	ENSMUSG00215015056	lncRNA gene	Chr16:68667560-68669841 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012750	lncRNA gene	Chr16:68620926-68623257 (+)
CBA/J	ENSMUSG00210015281	lncRNA gene	Chr16:68768830-68771098 (+)
DBA/2J	ENSMUSG00185004629	lncRNA gene	Chr16:68705256-68707526 (+)
FVB/NJ	ENSMUSG00205011983	lncRNA gene	Chr16:68449742-68452030 (+)
JF1/MsJ	ENSUMUG00000015781	lncRNA gene	Chr16:68932630-68934899 (+)
LP/J	ENSMUSG00230007649	lncRNA gene	Chr16:71269693-71271963 (+)
NOD/ShiLtJ	ENSMUSG00190016901	lncRNA gene	Chr16:68675680-68677948 (+)
NZO/HlLtJ	ENSMUSG00225029783	lncRNA gene	Chr16:74505653-74507925 (+)
PWK/PhJ	ENSLUMG00010011691	lncRNA gene	Chr16:68622937-68625209 (+)
SPRET/EiJ	ENSMSPG00010002143	lncRNA gene	Chr16:69356268-69358549 (+)
WSB/EiJ	ENSIUOG00005002328	lncRNA gene	Chr16:68696528-68698801 (+)

Homology

• Gene Tree
  Gm56620
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120735 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120735	Ensembl Gene Model | MGI Sequence Detail	334766	C57BL/6J
transcript	ENSMUST00000245469	Ensembl | MGI Sequence Detail	2308	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56620:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138963	Chr16:71824349-71824358 (+)	28 bp
Tssr138964	Chr16:71824395-71824414 (+)	79 bp
Tssr138965	Chr16:71824490-71824501 (+)	170 bp
Tssr138966	Chr16:71824515-71824532 (+)	198 bp
Tssr138967	Chr16:71824537-71824558 (+)	222 bp
Tssr138968	Chr16:71824571-71824582 (+)	251 bp
Tssr138969	Chr16:71824595-71824608 (+)	276 bp
Tssr138970	Chr16:71879996-71879999 (+)	55,672 bp