Gm56618 Gene Detail

Summary

• Symbol
  Gm56618
• Name
  predicted gene, 56618

• Feature Type
  lncRNA gene
• IDs
  MGI:7337150
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:13007358-13007728 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337150	lncRNA gene	Chr16:13007358-13007728 (-)
129S1/SvImJ	ENSMUSG00200012014	lncRNA gene	Chr16:9987634-9988004 (-)
A/J	ENSMUSG00195011827	lncRNA gene	Chr16:9552682-9553052 (-)
AKR/J	ENSMUSG00220017447	lncRNA gene	Chr16:9849534-9849904 (-)
BALB/cJ	ENSMUSG00180008793	lncRNA gene	Chr16:9789985-9790355 (-)
C3H/HeJ	ENSMUSG00175030027	lncRNA gene	Chr16:9944931-9945301 (-)
C57BL/6NJ	ENSMUSG00215025135	lncRNA gene	Chr16:9669647-9670017 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032661	lncRNA gene	Chr16:9854223-9854593 (-)
CBA/J	ENSMUSG00210012188	lncRNA gene	Chr16:9961890-9962260 (-)
DBA/2J	ENSMUSG00185010670	lncRNA gene	Chr16:9907424-9907794 (-)
FVB/NJ	ENSMUSG00205012896	lncRNA gene	Chr16:9904422-9904792 (-)
JF1/MsJ	ENSUMUG00000041247	lncRNA gene	Chr16:10019306-10019676 (-)
LP/J	ENSMUSG00230046784	lncRNA gene	Chr16:12483210-12483580 (-)
NOD/ShiLtJ	ENSMUSG00190049155	lncRNA gene	Chr16:10044390-10044760 (-)
NZO/HlLtJ	ENSMUSG00225032442	lncRNA gene	Chr16:15728346-15728716 (-)
PWK/PhJ	ENSLUMG00010017943	lncRNA gene	Chr16:9896927-9897297 (-)
SPRET/EiJ	ENSMSPG00010018065	lncRNA gene	Chr16:9865590-9865959 (-)
WSB/EiJ	ENSIUOG00005016756	lncRNA gene	Chr16:9978988-9979358 (-)

Homology

• Gene Tree
  Gm56618
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120723 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120723	Ensembl Gene Model | MGI Sequence Detail	371	C57BL/6J
transcript	ENSMUST00000245420	Ensembl | MGI Sequence Detail	371	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56618:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140037	Chr16:13007727-13007732 (-)	-2 bp