Gm56613 Gene Detail

Summary

• Symbol
  Gm56613
• Name
  predicted gene, 56613

• Feature Type
  lncRNA gene
• IDs
  MGI:7337140
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:38343029-38349074 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  331 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337140	lncRNA gene	Chr16:38343029-38349074 (+)
129S1/SvImJ	ENSMUSG00200030101	lncRNA gene	Chr16:35280102-35280649 (+)
A/J	ENSMUSG00195011303	lncRNA gene	Chr16:34825479-34826028 (+)
AKR/J	ENSMUSG00220030167	lncRNA gene	Chr16:35212160-35212709 (+)
BALB/cJ	ENSMUSG00180013374	lncRNA gene	Chr16:35040947-35041496 (+)
C3H/HeJ	ENSMUSG00175032283	lncRNA gene	Chr16:35266372-35266921 (+)
C57BL/6NJ	ENSMUSG00215023673	lncRNA gene	Chr16:35115046-35115595 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033627	lncRNA gene	Chr16:35572273-35572822 (+)
CBA/J	ENSMUSG00210028597	lncRNA gene	Chr16:35323486-35324035 (+)
DBA/2J	ENSMUSG00185025397	lncRNA gene	Chr16:35226437-35226986 (+)
FVB/NJ	ENSMUSG00205026691	lncRNA gene	Chr16:35201664-35202213 (+)
JF1/MsJ	ENSUMUG00000038021	lncRNA gene	Chr16:35471307-35471854 (+)
LP/J	ENSMUSG00230033905	lncRNA gene	Chr16:37798543-37799092 (+)
NOD/ShiLtJ	ENSMUSG00190023771	lncRNA gene	Chr16:35343342-35343891 (+)
NZO/HlLtJ	ENSMUSG00225028915	lncRNA gene	Chr16:40897934-40898483 (+)
PWK/PhJ	ENSLUMG00010030278	lncRNA gene	Chr16:35377049-35377596 (+)
SPRET/EiJ	ENSMSPG00010017686	lncRNA gene	Chr16:35332602-35333137 (+)
WSB/EiJ	ENSIUOG00005026930	lncRNA gene	Chr16:35430675-35431224 (+)

Homology

• Gene Tree
  Gm56613
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000120288 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120288	Ensembl Gene Model | MGI Sequence Detail	6046	C57BL/6J
transcript	ENSMUST00000321276	Ensembl | MGI Sequence Detail	1292	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56613:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138393	Chr16:38343141-38343163 (+)	123 bp