Gm56612 Gene Detail

Summary

• Symbol
  Gm56612
• Name
  predicted gene, 56612

• Feature Type
  lncRNA gene
• IDs
  MGI:7337138
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:21152105-21158921 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  278 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337138	lncRNA gene	Chr16:21152105-21158921 (+)
129S1/SvImJ	ENSMUSG00200047117	lncRNA gene	Chr16:18150798-18157614 (+)
A/J	ENSMUSG00195036089	lncRNA gene	Chr16:17709042-17715858 (+)
AKR/J	ENSMUSG00220046458	lncRNA gene	Chr16:18028513-18035329 (+)
BALB/cJ	ENSMUSG00180041992	lncRNA gene	Chr16:17949666-17956482 (+)
C3H/HeJ	ENSMUSG00175050819	lncRNA gene	Chr16:18094681-18101497 (+)
C57BL/6NJ	ENSMUSG00215042813	lncRNA gene	Chr16:17821849-17828665 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045792	lncRNA gene	Chr16:18441333-18448196 (+)
CBA/J	ENSMUSG00210047931	lncRNA gene	Chr16:18116359-18123175 (+)
DBA/2J	ENSMUSG00185034756	lncRNA gene	Chr16:18055138-18061954 (+)
FVB/NJ	ENSMUSG00205047323	lncRNA gene	Chr16:18055155-18061971 (+)
JF1/MsJ	ENSUMUG00000055056	lncRNA gene	Chr16:18284919-18291754 (+)
LP/J	ENSMUSG00230033991	lncRNA gene	Chr16:20634356-20641172 (+)
NOD/ShiLtJ	ENSMUSG00190051054	lncRNA gene	Chr16:18196636-18203452 (+)
NZO/HlLtJ	ENSMUSG00225039184	lncRNA gene	Chr16:23885398-23892214 (+)
PWK/PhJ	ENSLUMG00010050014	lncRNA gene	Chr16:18107578-18114406 (+)
SPRET/EiJ	ENSMSPG00010047948	lncRNA gene	Chr16:17984761-17991632 (+)
WSB/EiJ	ENSIUOG00005044070	lncRNA gene	Chr16:18261534-18268390 (+)

Homology

• Gene Tree
  Gm56612
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120420 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120420	Ensembl Gene Model | MGI Sequence Detail	6817	C57BL/6J
transcript	ENSMUST00000243205	Ensembl | MGI Sequence Detail	1299	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56612:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137510	Chr16:21152113-21152127 (+)	15 bp
Tssr137511	Chr16:21158705-21158709 (+)	6,602 bp