Gm56609 Gene Detail

Summary

• Symbol
  Gm56609
• Name
  predicted gene, 56609

• Feature Type
  lncRNA gene
• IDs
  MGI:7337132
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:60426030-60426825 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337132	lncRNA gene	Chr16:60426030-60426825 (-)
129S1/SvImJ	ENSMUSG00200021259	lncRNA gene	Chr16:57395287-57396082 (-)
A/J	ENSMUSG00195025325	lncRNA gene	Chr16:56994632-56995427 (-)
AKR/J	ENSMUSG00220019748	lncRNA gene	Chr16:57339776-57340571 (-)
BALB/cJ	ENSMUSG00180023963	lncRNA gene	Chr16:57165066-57165861 (-)
C3H/HeJ	ENSMUSG00175017829	lncRNA gene	Chr16:57419132-57419927 (-)
C57BL/6NJ	ENSMUSG00215023359	lncRNA gene	Chr16:57245080-57245875 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014155	lncRNA gene	Chr16:57386320-57387115 (-)
CBA/J	ENSMUSG00210019634	lncRNA gene	Chr16:57395165-57395960 (-)
DBA/2J	ENSMUSG00185025651	lncRNA gene	Chr16:57342406-57343201 (-)
FVB/NJ	ENSMUSG00205010475	lncRNA gene	Chr16:57123371-57124166 (-)
JF1/MsJ	ENSUMUG00000027999	lncRNA gene	Chr16:57539740-57540535 (-)
LP/J	ENSMUSG00230008845	lncRNA gene	Chr16:59896448-59897243 (-)
NOD/ShiLtJ	ENSMUSG00190007389	lncRNA gene	Chr16:57342797-57343592 (-)
NZO/HlLtJ	ENSMUSG00225036005	lncRNA gene	Chr16:62967990-62968785 (-)
PWK/PhJ	ENSLUMG00010011892	lncRNA gene	Chr16:57219336-57220131 (-)
SPRET/EiJ	ENSMSPG00010001678	lncRNA gene	Chr16:57860724-57861515 (-)
WSB/EiJ	ENSIUOG00005009503	lncRNA gene	Chr16:57492991-57493786 (-)

Homology

• Gene Tree
  Gm56609
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120652 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120652	Ensembl Gene Model | MGI Sequence Detail	796	C57BL/6J
transcript	ENSMUST00000244890	Ensembl | MGI Sequence Detail	796	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56609:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141662	Chr16:60426851-60426880 (-)	-41 bp
Tssr141661	Chr16:60426830-60426850 (-)	-15 bp