Gm56608 Gene Detail

Summary

• Symbol
  Gm56608
• Name
  predicted gene, 56608

• Feature Type
  lncRNA gene
• IDs
  MGI:7337130
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:89940845-89942393 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337130	lncRNA gene	Chr16:89940845-89942393 (+)
129S1/SvImJ	ENSMUSG00200039064	lncRNA gene	Chr16:86838283-86839810 (+)
A/J	ENSMUSG00195030059	lncRNA gene	Chr16:86625338-86626865 (+)
AKR/J	ENSMUSG00220016435	lncRNA gene	Chr16:86811221-86812748 (+)
BALB/cJ	ENSMUSG00180016252	lncRNA gene	Chr16:86698662-86700189 (+)
C3H/HeJ	ENSMUSG00175017436	lncRNA gene	Chr16:87036471-87037998 (+)
C57BL/6NJ	ENSMUSG00215033828	lncRNA gene	Chr16:86826346-86827873 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020193	lncRNA gene	Chr16:86375748-86377275 (+)
CBA/J	ENSMUSG00210041833	lncRNA gene	Chr16:86921871-86923398 (+)
DBA/2J	ENSMUSG00185035017	lncRNA gene	Chr16:86869650-86871177 (+)
FVB/NJ	ENSMUSG00205030102	lncRNA gene	Chr16:86656892-86658419 (+)
JF1/MsJ	ENSUMUG00000044597	lncRNA gene	Chr16:86997459-86998978 (+)
LP/J	ENSMUSG00230035188	lncRNA gene	Chr16:89383918-89385445 (+)
NOD/ShiLtJ	ENSMUSG00190029584	lncRNA gene	Chr16:86853097-86854624 (+)
NZO/HlLtJ	ENSMUSG00225031286	lncRNA gene	Chr16:92531817-92533344 (+)
PWK/PhJ	ENSLUMG00010014663	lncRNA gene	Chr16:86626261-86627781 (+)
SPRET/EiJ	ENSMSPG00010030089	lncRNA gene	Chr16:87797965-87799492 (+)
WSB/EiJ	ENSIUOG00005020776	lncRNA gene	Chr16:86771844-86773379 (+)

Homology

• Gene Tree
  Gm56608
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120080 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120080	Ensembl Gene Model | MGI Sequence Detail	1549	C57BL/6J
transcript	ENSMUST00000241261	Ensembl | MGI Sequence Detail	1549	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56608:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139275	Chr16:89940870-89940884 (+)	32 bp