Gm56606 Gene Detail

Summary

• Symbol
  Gm56606
• Name
  predicted gene, 56606

• Feature Type
  lncRNA gene
• IDs
  MGI:7337126
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:30320097-30330876 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  469 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337126	lncRNA gene	Chr16:30320097-30330876 (+)
129S1/SvImJ	ENSMUSG00200036218	lncRNA gene	Chr16:27346091-27347467 (+)
A/J	ENSMUSG00195029896	lncRNA gene	Chr16:26895462-26896824 (+)
AKR/J	ENSMUSG00220032844	lncRNA gene	Chr16:27182228-27183590 (+)
BALB/cJ	ENSMUSG00180030418	lncRNA gene	Chr16:27116508-27117870 (+)
C3H/HeJ	ENSMUSG00175038584	lncRNA gene	Chr16:27264235-27265611 (+)
C57BL/6NJ	ENSMUSG00215023803	lncRNA gene	Chr16:27133695-27135071 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037365	lncRNA gene	Chr16:27537074-27538442 (+)
CBA/J	ENSMUSG00210039419	lncRNA gene	Chr16:27306248-27307624 (+)
DBA/2J	ENSMUSG00185019390	lncRNA gene	Chr16:27221705-27223081 (+)
FVB/NJ	ENSMUSG00205025488	lncRNA gene	Chr16:27232185-27233547 (+)
JF1/MsJ	ENSUMUG00000044040	lncRNA gene	Chr16:27398941-27400300 (+)
LP/J	ENSMUSG00230034886	lncRNA gene	Chr16:29790585-29791961 (+)
NOD/ShiLtJ	ENSMUSG00190037829	lncRNA gene	Chr16:27410767-27412129 (+)
NZO/HlLtJ	ENSMUSG00225040510	lncRNA gene	Chr16:33027641-33029003 (+)
PWK/PhJ	ENSLUMG00010035275	lncRNA gene	Chr16:27230387-27231746 (+)
SPRET/EiJ	ENSMSPG00010018915	lncRNA gene	Chr16:27196711-27198051 (+)
WSB/EiJ	ENSIUOG00005036447	lncRNA gene	Chr16:27380322-27381698 (+)

Homology

• Gene Tree
  Gm56606
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120188 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120188	Ensembl Gene Model | MGI Sequence Detail	10780	C57BL/6J
transcript	ENSMUST00000241810	Ensembl | MGI Sequence Detail	1420	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56606:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137878	Chr16:30329487-30329512 (+)	9,403 bp
Tssr4837	Chr16:30329515-30329543 (+)	9,432 bp