Gm56604 Gene Detail

Summary

• Symbol
  Gm56604
• Name
  predicted gene, 56604

• Feature Type
  lncRNA gene
• IDs
  MGI:7337122
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:17739113-17740370 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337122	lncRNA gene	Chr16:17739113-17740370 (-)
129S1/SvImJ	ENSMUSG00200046522	lncRNA gene	Chr16:14735898-14736353 (-)
A/J	ENSMUSG00195035734	lncRNA gene	Chr16:14293192-14293647 (-)
AKR/J	ENSMUSG00220046565	lncRNA gene	Chr16:14609445-14609900 (-)
BALB/cJ	ENSMUSG00180042650	lncRNA gene	Chr16:14534428-14534884 (-)
C3H/HeJ	ENSMUSG00175050083	lncRNA gene	Chr16:14679434-14679889 (-)
C57BL/6NJ	ENSMUSG00215043337	lncRNA gene	Chr16:14400554-14401009 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045564	lncRNA gene	Chr16:14617889-14618347 (-)
CBA/J	ENSMUSG00210047101	lncRNA gene	Chr16:14695759-14696214 (-)
DBA/2J	ENSMUSG00185036443	lncRNA gene	Chr16:14641908-14642363 (-)
FVB/NJ	ENSMUSG00205048325	lncRNA gene	Chr16:14649530-14649985 (-)
JF1/MsJ	ENSUMUG00000054864	lncRNA gene	Chr16:14732273-14732732 (-)
LP/J	ENSMUSG00230045941	lncRNA gene	Chr16:17219771-17220227 (-)
NOD/ShiLtJ	ENSMUSG00190051464	lncRNA gene	Chr16:14781813-14782268 (-)
NZO/HlLtJ	ENSMUSG00225038147	lncRNA gene	Chr16:20465612-20466067 (-)
PWK/PhJ	ENSLUMG00010049088	lncRNA gene	Chr16:14606090-14606543 (-)
SPRET/EiJ	ENSMSPG00010048484	lncRNA gene	Chr16:14623763-14624169 (-)
WSB/EiJ	ENSIUOG00005045490	lncRNA gene	Chr16:14775882-14776337 (-)

Homology

• Gene Tree
  Gm56604
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  2
• Genomic Mutations
  2 involving Gm56604
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120128 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120128	Ensembl Gene Model | MGI Sequence Detail	1258	C57BL/6J
transcript	ENSMUST00000241507	Ensembl | MGI Sequence Detail	1258	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:304974 Saito R, et al., Two novel mouse models mimicking minor deletions in 22q11.2 deletion syndrome revealed the contribution of each deleted region to psychiatric disorders. Mol Brain. 2021 Apr 12;14(1):68

TSS for Gm56604:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140221	Chr16:17739788-17739808 (-)	572 bp
Tssr140220	Chr16:17739766-17739786 (-)	594 bp