Gm56603 Gene Detail

Summary

• Symbol
  Gm56603
• Name
  predicted gene, 56603

• Feature Type
  lncRNA gene
• IDs
  MGI:7337120
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:20270241-20273128 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  224 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337120	lncRNA gene	Chr16:20270241-20273128 (-)
129S1/SvImJ	ENSMUSG00200048113	lncRNA gene	Chr16:17268150-17270584 (-)
A/J	ENSMUSG00195035225	lncRNA gene	Chr16:16825630-16828062 (-)
AKR/J	ENSMUSG00220045668	lncRNA gene	Chr16:17143353-17145783 (-)
BALB/cJ	ENSMUSG00180043357	lncRNA gene	Chr16:17066936-17069368 (-)
C3H/HeJ	ENSMUSG00175050391	lncRNA gene	Chr16:17212007-17214439 (-)
C57BL/6NJ	ENSMUSG00215042513	lncRNA gene	Chr16:16932943-16935375 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046177	lncRNA gene	Chr16:17548208-17550727 (-)
CBA/J	ENSMUSG00210047772	lncRNA gene	Chr16:17233787-17236219 (-)
DBA/2J	ENSMUSG00185033869	lncRNA gene	Chr16:17172527-17174955 (-)
FVB/NJ	ENSMUSG00205048114	lncRNA gene	Chr16:17175263-17177695 (-)
JF1/MsJ	ENSUMUG00000054764	lncRNA gene	Chr16:17360638-17363079 (-)
LP/J	ENSMUSG00230047828	lncRNA gene	Chr16:19751792-19754224 (-)
NOD/ShiLtJ	ENSMUSG00190051490	lncRNA gene	Chr16:17314041-17316475 (-)
NZO/HlLtJ	ENSMUSG00225038794	lncRNA gene	Chr16:22997574-23000006 (-)
PWK/PhJ	ENSLUMG00010050604	lncRNA gene	Chr16:17185776-17188231 (-)
SPRET/EiJ	ENSMSPG00010047057	lncRNA gene	Chr16:17055769-17058462 (-)
WSB/EiJ	ENSIUOG00005045610	lncRNA gene	Chr16:17369311-17371741 (-)

Homology

• Gene Tree
  Gm56603
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120468 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120468	Ensembl Gene Model | MGI Sequence Detail	2888	C57BL/6J
transcript	ENSMUST00000243549	Ensembl | MGI Sequence Detail	1052	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56603:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140387	Chr16:20273116-20273125 (-)	7 bp