Gm56600 Gene Detail

Summary

• Symbol
  Gm56600
• Name
  predicted gene, 56600

• Feature Type
  lncRNA gene
• IDs
  MGI:7337114
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:19059925-19061438 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337114	lncRNA gene	Chr16:19059925-19061438 (+)
129S1/SvImJ	ENSMUSG00200048746	lncRNA gene	Chr16:16057264-16058745 (+)
A/J	ENSMUSG00195035338	lncRNA gene	Chr16:15614700-15616181 (+)
AKR/J	ENSMUSG00220046173	lncRNA gene	Chr16:15929759-15931240 (+)
BALB/cJ	ENSMUSG00180041762	lncRNA gene	Chr16:15855994-15857475 (+)
C3H/HeJ	ENSMUSG00175051168	lncRNA gene	Chr16:16000653-16002134 (+)
C57BL/6NJ	ENSMUSG00215042365	lncRNA gene	Chr16:15721981-15723462 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045857	lncRNA gene	Chr16:16358644-16360125 (+)
CBA/J	ENSMUSG00210047851	lncRNA gene	Chr16:16016919-16018400 (+)
DBA/2J	ENSMUSG00185035357	lncRNA gene	Chr16:15961590-15963071 (+)
FVB/NJ	ENSMUSG00205047742	lncRNA gene	Chr16:15970893-15972374 (+)
JF1/MsJ	ENSUMUG00000054504	lncRNA gene	Chr16:16200917-16202396 (+)
LP/J	ENSMUSG00230046939	lncRNA gene	Chr16:18540931-18542412 (+)
NOD/ShiLtJ	ENSMUSG00190050922	lncRNA gene	Chr16:16103165-16104646 (+)
NZO/HlLtJ	ENSMUSG00225038182	lncRNA gene	Chr16:21786763-21788244 (+)
PWK/PhJ	ENSLUMG00010049485	lncRNA gene	Chr16:15995480-15996961 (+)
SPRET/EiJ	ENSMSPG00010047391	lncRNA gene	Chr16:15884731-15886212 (+)
WSB/EiJ	ENSIUOG00005043414	lncRNA gene	Chr16:16091923-16093406 (+)

Homology

• Gene Tree
  Gm56600
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120432 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120432	Ensembl Gene Model | MGI Sequence Detail	1514	C57BL/6J
transcript	ENSMUST00000243280	Ensembl | MGI Sequence Detail	1514	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56600:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137404	Chr16:19059964-19060009 (+)	62 bp
Tssr137405	Chr16:19060024-19060034 (+)	104 bp