Gm56597 Gene Detail

Summary

• Symbol
  Gm56597
• Name
  predicted gene, 56597

• Feature Type
  lncRNA gene
• IDs
  MGI:7337108
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:11071866-11074500 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337108	lncRNA gene	Chr16:11071866-11074500 (+)
129S1/SvImJ	ENSMUSG00200012053	lncRNA gene	Chr16:8078267-8078732 (+)
A/J	ENSMUSG00195011953	lncRNA gene	Chr16:7616307-7616772 (+)
AKR/J	ENSMUSG00220017537	lncRNA gene	Chr16:7905109-7905574 (+)
BALB/cJ	ENSMUSG00180009153	lncRNA gene	Chr16:7855512-7855977 (+)
C3H/HeJ	ENSMUSG00175031138	lncRNA gene	Chr16:8045246-8045712 (+)
C57BL/6NJ	ENSMUSG00215021573	lncRNA gene	Chr16:7722172-7722637 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032808	lncRNA gene	Chr16:7977793-7978258 (+)
CBA/J	ENSMUSG00210012260	lncRNA gene	Chr16:8062410-8062876 (+)
DBA/2J	ENSMUSG00185010745	lncRNA gene	Chr16:8007733-8008199 (+)
FVB/NJ	ENSMUSG00205014391	lncRNA gene	Chr16:7925543-7926008 (+)
JF1/MsJ	ENSUMUG00000039889	lncRNA gene	Chr16:8134466-8134940 (+)
LP/J	ENSMUSG00230046208	lncRNA gene	Chr16:10574014-10574479 (+)
NOD/ShiLtJ	ENSMUSG00190027942	lncRNA gene	Chr16:8107687-8108152 (+)
NZO/HlLtJ	ENSMUSG00225032287	lncRNA gene	Chr16:13791988-13792453 (+)
PWK/PhJ	ENSLUMG00010017891	lncRNA gene	Chr16:7994499-7994973 (+)
SPRET/EiJ	ENSMSPG00010018366	lncRNA gene	Chr16:7948020-7948484 (+)
WSB/EiJ	ENSIUOG00005017001	lncRNA gene	Chr16:8071747-8072213 (+)

Homology

• Gene Tree
  Gm56597
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000120347 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120347	Ensembl Gene Model | MGI Sequence Detail	2635	C57BL/6J
transcript	ENSMUST00000317073	Ensembl | MGI Sequence Detail	1507	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137081	Chr16:11072356-11072383 (+)	504 bp