Gm56596 Gene Detail

Summary

• Symbol
  Gm56596
• Name
  predicted gene, 56596

• Feature Type
  lncRNA gene
• IDs
  MGI:7337106
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:94327351-94329583 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337106	lncRNA gene	Chr16:94327351-94329583 (+)
129S1/SvImJ	ENSMUSG00200016880	lncRNA gene	Chr16:91263035-91263378 (+)
A/J	ENSMUSG00195029188	lncRNA gene	Chr16:91017213-91017556 (+)
AKR/J	ENSMUSG00220016235	lncRNA gene	Chr16:91259780-91260123 (+)
BALB/cJ	ENSMUSG00180015435	lncRNA gene	Chr16:91091368-91091711 (+)
C3H/HeJ	ENSMUSG00175002946	lncRNA gene	Chr16:91428278-91428621 (+)
C57BL/6NJ	ENSMUSG00215021302	lncRNA gene	Chr16:91219797-91220140 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020513	lncRNA gene	Chr16:90814249-90814592 (+)
CBA/J	ENSMUSG00210017964	lncRNA gene	Chr16:91333139-91333482 (+)
DBA/2J	ENSMUSG00185034535	lncRNA gene	Chr16:91275205-91275548 (+)
FVB/NJ	ENSMUSG00205027568	lncRNA gene	Chr16:91052099-91052442 (+)
JF1/MsJ	ENSUMUG00000043587	lncRNA gene	Chr16:91412504-91412847 (+)
LP/J	ENSMUSG00230028855	lncRNA gene	Chr16:93809623-93809966 (+)
NOD/ShiLtJ	ENSMUSG00190003958	lncRNA gene	Chr16:91241040-91241383 (+)
NZO/HlLtJ	ENSMUSG00225031966	lncRNA gene	Chr16:96918840-96919183 (+)
PWK/PhJ	ENSLUMG00010014612	lncRNA gene	Chr16:91052668-91053011 (+)
SPRET/EiJ	ENSMSPG00010021914	lncRNA gene	Chr16:92173723-92174066 (+)
WSB/EiJ	ENSIUOG00005021277	lncRNA gene	Chr16:91181999-91182342 (+)

Homology

• Gene Tree
  Gm56596
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120258 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120258	Ensembl Gene Model | MGI Sequence Detail	2233	C57BL/6J
transcript	ENSMUST00000242120	Ensembl | MGI Sequence Detail	2233	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56596:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139556	Chr16:94327896-94327953 (+)	574 bp