Gm56594 Gene Detail

Summary

• Symbol
  Gm56594
• Name
  predicted gene, 56594

• Feature Type
  lncRNA gene
• IDs
  MGI:7337102
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:88778140-88778726 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337102	lncRNA gene	Chr16:88778140-88778726 (-)
129S1/SvImJ	ENSMUSG00200038395	lncRNA gene	Chr16:85656701-85657279 (-)
A/J	ENSMUSG00195029076	lncRNA gene	Chr16:85457233-85457811 (-)
AKR/J	ENSMUSG00220016381	lncRNA gene	Chr16:85640503-85641081 (-)
BALB/cJ	ENSMUSG00180016639	lncRNA gene	Chr16:85530507-85531085 (-)
C3H/HeJ	ENSMUSG00175016143	lncRNA gene	Chr16:85868716-85869294 (-)
C57BL/6NJ	ENSMUSG00215034089	lncRNA gene	Chr16:85659124-85659702 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020846	lncRNA gene	Chr16:85227326-85227931 (-)
CBA/J	ENSMUSG00210040509	lncRNA gene	Chr16:85750705-85751283 (-)
DBA/2J	ENSMUSG00185034974	lncRNA gene	Chr16:85702027-85702605 (-)
FVB/NJ	ENSMUSG00205025816	lncRNA gene	Chr16:85507327-85507905 (-)
JF1/MsJ	ENSUMUG00000048300	lncRNA gene	Chr16:85859305-85859901 (-)
LP/J	ENSMUSG00230035879	lncRNA gene	Chr16:88216401-88216979 (-)
NOD/ShiLtJ	ENSMUSG00190028191	lncRNA gene	Chr16:85684959-85685537 (-)
NZO/HlLtJ	ENSMUSG00225031607	lncRNA gene	Chr16:91396492-91397070 (-)
PWK/PhJ	ENSLUMG00010014500	lncRNA gene	Chr16:85493341-85493955 (-)
SPRET/EiJ	ENSMSPG00010033404	lncRNA gene	Chr16:86658209-86658778 (-)
WSB/EiJ	ENSIUOG00005020224	lncRNA gene	Chr16:85639799-85640377 (-)

Homology

• Gene Tree
  Gm56594
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120089 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120089	Ensembl Gene Model | MGI Sequence Detail	587	C57BL/6J
transcript	ENSMUST00000241297	Ensembl | MGI Sequence Detail	587	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56594:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141981	Chr16:88778716-88778719 (-)	8 bp