Gm56589 Gene Detail

Summary

• Symbol
  Gm56589
• Name
  predicted gene, 56589

• Feature Type
  lncRNA gene
• IDs
  MGI:7337092
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:120252347-120253989 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337092	lncRNA gene	Chr13:120252347-120253989 (+)
129S1/SvImJ	ENSMUSG00200003709	lncRNA gene	Chr13:114310086-114310540 (+)
A/J	ENSMUSG00195000992	lncRNA gene	Chr13:114994853-114995307 (+)
AKR/J	ENSMUSG00220012733	lncRNA gene	Chr13:113294614-113295068 (+)
BALB/cJ	ENSMUSG00180011087	lncRNA gene	Chr13:115407260-115407714 (+)
C3H/HeJ	ENSMUSG00175002358	lncRNA gene	Chr13:115503033-115503487 (+)
C57BL/6NJ	ENSMUSG00215000974	lncRNA gene	Chr13:115583050-115583504 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002614	lncRNA gene	Chr13:114561719-114562173 (+)
CBA/J	ENSMUSG00210017348	lncRNA gene	Chr13:114806802-114807256 (+)
DBA/2J	ENSMUSG00185031110	lncRNA gene	Chr13:118599271-118599725 (+)
FVB/NJ	ENSMUSG00205001286	lncRNA gene	Chr13:114475771-114476225 (+)
JF1/MsJ	ENSUMUG00000017980	lncRNA gene	Chr13:118041115-118041569 (+)
LP/J	ENSMUSG00230012792	lncRNA gene	Chr13:128882953-128883407 (+)
NOD/ShiLtJ	ENSMUSG00190039826	lncRNA gene	Chr13:25209443-25209897 (+)
NZO/HlLtJ	ENSMUSG00225031302	lncRNA gene	Chr13:120960208-120960662 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010006957	lncRNA gene	Chr13:116017907-116018365 (+)
WSB/EiJ	ENSIUOG00005013102	lncRNA gene	Chr13:114663118-114663572 (+)

Homology

• Gene Tree
  Gm56589
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120975 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120975	Ensembl Gene Model | MGI Sequence Detail	1643	C57BL/6J
transcript	ENSMUST00000246725	Ensembl | MGI Sequence Detail	1643	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4216	Chr13:120252729-120252751 (+)	393 bp
Tssr4217	Chr13:120252761-120252793 (+)	430 bp