Gm56588 Gene Detail

Summary

• Symbol
  Gm56588
• Name
  predicted gene, 56588

• Feature Type
  lncRNA gene
• IDs
  MGI:7337090
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:92667384-92669317 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337090	lncRNA gene	Chr13:92667384-92669317 (+)
129S1/SvImJ	ENSMUSG00200009397	lncRNA gene	Chr13:87164228-87166161 (+)
A/J	ENSMUSG00195024475	lncRNA gene	Chr13:87682327-87684260 (+)
AKR/J	ENSMUSG00220014224	lncRNA gene	Chr13:86159498-86161431 (+)
BALB/cJ	ENSMUSG00180016353	lncRNA gene	Chr13:88200466-88202399 (+)
C3H/HeJ	ENSMUSG00175023657	lncRNA gene	Chr13:88379033-88380966 (+)
C57BL/6NJ	ENSMUSG00215003034	lncRNA gene	Chr13:88264910-88266843 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010006	lncRNA gene	Chr13:87488374-87490307 (+)
CBA/J	ENSMUSG00210024474	lncRNA gene	Chr13:87660822-87662755 (+)
DBA/2J	ENSMUSG00185019672	lncRNA gene	Chr13:91346870-91348803 (+)
FVB/NJ	ENSMUSG00205008504	lncRNA gene	Chr13:87151982-87153915 (+)
JF1/MsJ	ENSUMUG00000022708	lncRNA gene	Chr13:91087133-91089066 (+)
LP/J	ENSMUSG00230038162	lncRNA gene	Chr13:101364959-101366892 (+)
NOD/ShiLtJ	ENSMUSG00190019292	lncRNA gene	Chr13:88047381-88049314 (+)
NZO/HlLtJ	ENSMUSG00225034457	lncRNA gene	Chr13:93893234-93895167 (+)
PWK/PhJ	ENSLUMG00010011641	lncRNA gene	Chr13:87189898-87191831 (+)
SPRET/EiJ	ENSMSPG00010006825	lncRNA gene	Chr13:88395156-88397041 (+)
WSB/EiJ	ENSIUOG00005032118	lncRNA gene	Chr13:87073393-87075326 (+)

Homology

• Gene Tree
  Gm56588
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120978 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120978	Ensembl Gene Model | MGI Sequence Detail	1934	C57BL/6J
transcript	ENSMUST00000246744	Ensembl | MGI Sequence Detail	1934	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56588:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120629	Chr13:92667415-92667431 (+)	39 bp
Tssr120630	Chr13:92667441-92667469 (+)	71 bp