Gm56587 Gene Detail

Summary

• Symbol
  Gm56587
• Name
  predicted gene, 56587

• Feature Type
  lncRNA gene
• IDs
  MGI:7337088
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:32004048-32006240 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337088	lncRNA gene	Chr13:32004048-32006240 (+)
129S1/SvImJ	ENSMUSG00200030711	lncRNA gene	Chr13:29198482-29200686 (+)
A/J	ENSMUSG00195039243	lncRNA gene	Chr13:28303233-28305437 (+)
AKR/J	ENSMUSG00220013114	lncRNA gene	Chr13:28162581-28164797 (+)
BALB/cJ	ENSMUSG00180023195	lncRNA gene	Chr13:28603390-28605590 (+)
C3H/HeJ	ENSMUSG00175033264	lncRNA gene	Chr13:28625712-28627928 (+)
C57BL/6NJ	ENSMUSG00215018727	lncRNA gene	Chr13:28796647-28798843 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011328	lncRNA gene	Chr13:28759721-28761904 (+)
CBA/J	ENSMUSG00210028031	lncRNA gene	Chr13:28569326-28571534 (+)
DBA/2J	ENSMUSG00185020994	lncRNA gene	Chr13:29388401-29390613 (+)
FVB/NJ	ENSMUSG00205030327	lncRNA gene	Chr13:28415005-28417209 (+)
JF1/MsJ	ENSUMUG00000023182	lncRNA gene	Chr13:29040919-29043137 (+)
LP/J	ENSMUSG00230021041	lncRNA gene	Chr13:38712990-38715202 (+)
NOD/ShiLtJ	ENSMUSG00190035881	lncRNA gene	Chr13:28779134-28781326 (+)
NZO/HlLtJ	ENSMUSG00225035522	lncRNA gene	Chr13:32513288-32515491 (+)
PWK/PhJ	ENSLUMG00010033351	lncRNA gene	Chr13:27822624-27824872 (+)
SPRET/EiJ	ENSMSPG00010025904	lncRNA gene	Chr13:27901044-27903207 (+)
WSB/EiJ	ENSIUOG00005017123	lncRNA gene	Chr13:27977459-27979573 (+)

Homology

• Gene Tree
  Gm56587
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120974 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120974	Ensembl Gene Model | MGI Sequence Detail	2193	C57BL/6J
transcript	ENSMUST00000246723	Ensembl | MGI Sequence Detail	1294	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56587:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119147	Chr13:32004046-32004051 (+)	1 bp