Gm56585 Gene Detail

Summary

• Symbol
  Gm56585
• Name
  predicted gene, 56585

• Feature Type
  lncRNA gene
• IDs
  MGI:7337084
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:100382943-100383846 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337084	lncRNA gene	Chr13:100382943-100383846 (-)
129S1/SvImJ	ENSMUSG00200009119	lncRNA gene	Chr13:94947391-94948294 (-)
A/J	ENSMUSG00195030924	lncRNA gene	Chr13:95422581-95423483 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180040106	lncRNA gene	Chr13:95956333-95957236 (-)
C3H/HeJ	ENSMUSG00175018515	lncRNA gene	Chr13:96123123-96124010 (-)
C3H/HeJ	ENSMUSG00175029395	lncRNA gene	Chr15:32197042-32197945 (-)
C57BL/6NJ	ENSMUSG00215035987	lncRNA gene	Chr13:96035225-96036128 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011813	lncRNA gene	Chr13:95287087-95288250 (-)
CBA/J	ENSMUSG00210011994	lncRNA gene	Chr13:95460635-95461538 (-)
DBA/2J	ENSMUSG00185019982	lncRNA gene	Chr13:99121661-99122564 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000029949	lncRNA gene	Chr13:98847687-98848850 (-)
LP/J	ENSMUSG00230038406	lncRNA gene	Chr13:109285103-109286005 (-)
LP/J	ENSMUSG00230038375	lncRNA gene	Chr13:109132549-109133452 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225037679	lncRNA gene	Chr13:101636231-101637134 (-)
PWK/PhJ	ENSLUMG00010027018	lncRNA gene	Chr13:94868060-94868974 (-)
SPRET/EiJ	ENSMSPG00010009578	lncRNA gene	Chr13:96219620-96220772 (-)
WSB/EiJ	ENSIUOG00005036049	lncRNA gene	Chr13:94800743-94801646 (-)

Homology

• Gene Tree
  Gm56585
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120924 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120924	Ensembl Gene Model | MGI Sequence Detail	904	C57BL/6J
transcript	ENSMUST00000246516	Ensembl | MGI Sequence Detail	904	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56585:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123783	Chr13:100383840-100383851 (-)	0 bp