Gm56583 Gene Detail

Summary

• Symbol
  Gm56583
• Name
  predicted gene, 56583

• Feature Type
  lncRNA gene
• IDs
  MGI:7337080
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:102159024-102224370 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1787 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337080	lncRNA gene	Chr13:102159024-102224370 (+)
129S1/SvImJ	ENSMUSG00200009263	lncRNA gene	Chr13:96619284-96670842 (+)
A/J	ENSMUSG00195030201	lncRNA gene	Chr13:97201000-97252662 (+)
AKR/J	ENSMUSG00220027704	lncRNA gene	Chr13:95649745-95701314 (+)
BALB/cJ	ENSMUSG00180038058	lncRNA gene	Chr13:97767145-97818710 (+)
C3H/HeJ	ENSMUSG00175018364	lncRNA gene	Chr13:97867059-97918622 (+)
C57BL/6NJ	ENSMUSG00215031562	lncRNA gene	Chr13:97817198-97868804 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011685	lncRNA gene	Chr13:96988230-97039065 (+)
CBA/J	ENSMUSG00210011864	lncRNA gene	Chr13:97190685-97242244 (+)
DBA/2J	ENSMUSG00185027104	lncRNA gene	Chr13:100933178-100984729 (+)
FVB/NJ	ENSMUSG00205035241	lncRNA gene	Chr13:96614021-96665578 (+)
JF1/MsJ	ENSUMUG00000033202	lncRNA gene	Chr13:100541681-100590078 (+)
LP/J	ENSMUSG00230008363	lncRNA gene	Chr13:111089132-111140688 (+)
NOD/ShiLtJ	ENSMUSG00190044239	lncRNA gene	Chr13:97505667-97557325 (+)
NZO/HlLtJ	ENSMUSG00225037556	lncRNA gene	Chr13:103447672-103499218 (+)
PWK/PhJ	ENSLUMG00010026780	lncRNA gene	Chr13:96596078-96654867 (+)
SPRET/EiJ	ENSMSPG00010009615	lncRNA gene	Chr13:97962279-98013695 (+)
WSB/EiJ	ENSIUOG00005035313	lncRNA gene	Chr13:96584051-96635671 (+)

Homology

• Gene Tree
  Gm56583
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120871 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120871	Ensembl Gene Model | MGI Sequence Detail	65347	C57BL/6J
transcript	ENSMUST00000246218	Ensembl | MGI Sequence Detail	1370	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56583:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120871	Chr13:102172715-102172722 (+)	13,695 bp