Gm56579 Gene Detail

Summary

• Symbol
  Gm56579
• Name
  predicted gene, 56579

• Feature Type
  lncRNA gene
• IDs
  MGI:7337072
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:45545287-45545415 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337072	lncRNA gene	Chr13:45545287-45545415 (+)
129S1/SvImJ	ENSMUSG00200036807	lncRNA gene	Chr13:42791650-42791778 (+)
A/J	ENSMUSG00195030812	lncRNA gene	Chr13:41851963-41852091 (+)
AKR/J	ENSMUSG00220009478	lncRNA gene	Chr13:41664914-41665042 (+)
BALB/cJ	ENSMUSG00180008875	lncRNA gene	Chr13:42158492-42158620 (+)
C3H/HeJ	ENSMUSG00175031487	lncRNA gene	Chr13:42122800-42122928 (+)
C57BL/6NJ	ENSMUSG00215007465	lncRNA gene	Chr13:42289077-42289205 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031833	lncRNA gene	Chr13:42199025-42199153 (+)
CBA/J	ENSMUSG00210028704	lncRNA gene	Chr13:42128313-42128441 (+)
DBA/2J	ENSMUSG00185033237	lncRNA gene	Chr13:42948319-42948447 (+)
FVB/NJ	ENSMUSG00205013390	lncRNA gene	Chr13:41903732-41903860 (+)
JF1/MsJ	ENSUMUG00000018161	lncRNA gene	Chr13:42487772-42487900 (+)
LP/J	ENSMUSG00230030699	lncRNA gene	Chr13:52260622-52260750 (+)
NOD/ShiLtJ	ENSMUSG00190012802	lncRNA gene	Chr13:42347131-42347259 (+)
NZO/HlLtJ	ENSMUSG00225036368	lncRNA gene	Chr13:46029379-46029507 (+)
PWK/PhJ	ENSLUMG00010021910	lncRNA gene	Chr13:41315759-41315887 (+)
SPRET/EiJ	ENSMSPG00010032748	lncRNA gene	Chr13:41409291-41409416 (+)
WSB/EiJ	ENSIUOG00005028233	lncRNA gene	Chr13:41477947-41478075 (+)

Homology

• Gene Tree
  Gm56579
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120800 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120800	Ensembl Gene Model | MGI Sequence Detail	129	C57BL/6J
transcript	ENSMUST00000245867	Ensembl | MGI Sequence Detail	129	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56579:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119572	Chr13:45545240-45545255 (+)	-39 bp
Tssr119573	Chr13:45545256-45545270 (+)	-24 bp