Gm56578 Gene Detail

Summary

• Symbol
  Gm56578
• Name
  predicted gene, 56578

• Feature Type
  lncRNA gene
• IDs
  MGI:7337070
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:14127794-14128973 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337070	lncRNA gene	Chr13:14127794-14128973 (-)
129S1/SvImJ	ENSMUSG00200014208	lncRNA gene	Chr13:11354276-11355499 (-)
A/J	ENSMUSG00195039058	lncRNA gene	Chr13:10423670-10424845 (-)
AKR/J	ENSMUSG00220032423	lncRNA gene	Chr13:10440694-10441964 (-)
BALB/cJ	ENSMUSG00180036234	lncRNA gene	Chr13:10772742-10773916 (-)
C3H/HeJ	ENSMUSG00175034629	lncRNA gene	Chr13:10874100-10875274 (-)
C57BL/6NJ	ENSMUSG00215028654	lncRNA gene	Chr13:10882479-10883653 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014164	lncRNA gene	Chr13:11015294-11016476 (-)
CBA/J	ENSMUSG00210031589	lncRNA gene	Chr13:10739706-10740880 (-)
DBA/2J	ENSMUSG00185013714	lncRNA gene	Chr13:11434409-11435583 (-)
FVB/NJ	ENSMUSG00205053098	lncRNA gene	Chr13:10674755-10675929 (-)
JF1/MsJ	ENSUMUG00000020530	lncRNA gene	Chr13:11269105-11270363 (-)
LP/J	ENSMUSG00230036474	lncRNA gene	Chr13:20843412-20844586 (-)
NOD/ShiLtJ	ENSMUSG00190024573	lncRNA gene	Chr13:10744761-10745935 (-)
NZO/HlLtJ	ENSMUSG00225032499	lncRNA gene	Chr13:14609628-14610802 (-)
PWK/PhJ	ENSLUMG00010030357	lncRNA gene	Chr13:10223852-10225067 (-)
SPRET/EiJ	ENSMSPG00010025272	lncRNA gene	Chr13:9873224-9874380 (-)
WSB/EiJ	ENSIUOG00005035210	lncRNA gene	Chr13:10104704-10105918 (-)

Homology

• Gene Tree
  Gm56578
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120790 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120790	Ensembl Gene Model | MGI Sequence Detail	1180	C57BL/6J
transcript	ENSMUST00000245822	Ensembl | MGI Sequence Detail	1180	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56578:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121483	Chr13:14128917-14128955 (-)	37 bp