Gm56577 Gene Detail

Summary

• Symbol
  Gm56577
• Name
  predicted gene, 56577

• Feature Type
  lncRNA gene
• IDs
  MGI:7337068
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:74757356-74758159 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  107

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337068	lncRNA gene	Chr13:74757356-74758159 (+)
129S1/SvImJ	ENSMUSG00200035294	lncRNA gene	Chr11:3646519-3647295 (-)
129S1/SvImJ	ENSMUSG00200014273	lncRNA gene	Chr13:69167393-69168192 (+)
129S1/SvImJ	ENSMUSG00200006087	lncRNA gene	Chr9:81851896-81852672 (+)
129S1/SvImJ	ENSMUSG00200036838	lncRNA gene	Chr16:28216783-28217558 (+)
129S1/SvImJ	ENSMUSG00200017852	lncRNA gene	Chr2:155935624-155936398 (-)
129S1/SvImJ	ENSMUSG00200005940	lncRNA gene	Chr4:39806645-39807420 (-)
129S1/SvImJ	ENSMUSG00200046385	lncRNA gene	Chr6:87364327-87365099 (-)
129S1/SvImJ	ENSMUSG00200052337	lncRNA gene	Chr6:121839883-121840655 (-)
129S1/SvImJ	ENSMUSG00200048832	lncRNA gene	Chr6:124567469-124568244 (+)
129S1/SvImJ	ENSMUSG00200034171	lncRNA gene	ChrX:128440443-128441218 (+)
129S1/SvImJ	ENSMUSG00200010844	lncRNA gene	Chr10:27018477-27019252 (+)
A/J	ENSMUSG00195010571	lncRNA gene	Chr2:43693221-43693994 (-)
A/J	ENSMUSG00195030831	lncRNA gene	Chr16:27762715-27763490 (+)
A/J	ENSMUSG00195030134	lncRNA gene	Chr13:69742067-69742866 (+)
A/J	ENSMUSG00195005703	lncRNA gene	Chr11:11990785-11991560 (-)
A/J	ENSMUSG00195015819	lncRNA gene	Chr10:27291427-27292202 (+)
A/J	ENSMUSG00195000562	lncRNA gene	Chr1:91688913-91689688 (-)
A/J	ENSMUSG00195035442	lncRNA gene	Chr6:123988450-123989225 (+)
A/J	ENSMUSG00195022214	lncRNA gene	ChrX:133438533-133439308 (+)
A/J	ENSMUSG00195007942	lncRNA gene	Chr9:81669746-81670522 (+)
AKR/J	ENSMUSG00220021934	lncRNA gene	Chr18:42904559-42905331 (+)
AKR/J	ENSMUSG00220039495	lncRNA gene	Chr13:68333224-68334023 (+)
AKR/J	ENSMUSG00220009768	lncRNA gene	Chr7:39427323-39428098 (+)
AKR/J	ENSMUSG00220044091	lncRNA gene	Chr6:122850105-122850880 (+)
AKR/J	ENSMUSG00220011976	lncRNA gene	Chr10:26983080-26983855 (+)
AKR/J	ENSMUSG00220038939	lncRNA gene	Chr4:39961979-39962754 (-)
AKR/J	ENSMUSG00220009616	lncRNA gene	Chr11:3604061-3604837 (-)
AKR/J	ENSMUSG00220036965	lncRNA gene	ChrX:125407710-125408485 (+)
AKR/J	ENSMUSG00220035513	lncRNA gene	Chr16:28064130-28064905 (+)
BALB/cJ	ENSMUSG00180042410	lncRNA gene	ChrX:128814279-128815054 (+)
BALB/cJ	ENSMUSG00180020170	lncRNA gene	Chr10:27415921-27416696 (+)
BALB/cJ	ENSMUSG00180004370	lncRNA gene	Chr11:11999288-12000063 (-)
BALB/cJ	ENSMUSG00180021219	lncRNA gene	Chr11:111862731-111863506 (+)
BALB/cJ	ENSMUSG00180006467	lncRNA gene	Chr12:48322523-48323296 (-)
BALB/cJ	ENSMUSG00180028523	lncRNA gene	Chr13:70240391-70241190 (+)
BALB/cJ	ENSMUSG00180032499	lncRNA gene	Chr16:27983760-27984535 (+)
BALB/cJ	ENSMUSG00180042199	lncRNA gene	Chr6:124325472-124326247 (+)
C3H/HeJ	ENSMUSG00175045047	lncRNA gene	Chr6:123994560-123995335 (+)
C3H/HeJ	ENSMUSG00175005033	lncRNA gene	Chr9:81834587-81835363 (+)
C3H/HeJ	ENSMUSG00175000524	lncRNA gene	Chr1:8545782-8546557 (+)
C3H/HeJ	ENSMUSG00175032079	lncRNA gene	ChrX:133383387-133384162 (+)
C3H/HeJ	ENSMUSG00175027176	lncRNA gene	Chr10:27173249-27174024 (+)
C3H/HeJ	ENSMUSG00175041211	lncRNA gene	Chr16:28134447-28135222 (+)
C3H/HeJ	ENSMUSG00175012394	lncRNA gene	Chr12:51393169-51393944 (-)
C3H/HeJ	ENSMUSG00175008792	lncRNA gene	Chr13:70518679-70519478 (+)
C3H/HeJ	ENSMUSG00175010800	lncRNA gene	Chr11:3578933-3579709 (-)
C3H/HeJ	ENSMUSG00175003791	lncRNA gene	Chr7:42539298-42540073 (+)
C57BL/6NJ	ENSMUSG00215049813	lncRNA gene	Chr6:121603625-121604397 (-)
C57BL/6NJ	ENSMUSG00215038017	lncRNA gene	Chr6:124320944-124321719 (+)
C57BL/6NJ	ENSMUSG00215045659	lncRNA gene	Chr1:168648428-168649203 (-)
C57BL/6NJ	ENSMUSG00215016366	lncRNA gene	Chr10:26964109-26964884 (+)
C57BL/6NJ	ENSMUSG00215033176	lncRNA gene	ChrX:129136494-129137269 (+)
C57BL/6NJ	ENSMUSG00215012728	lncRNA gene	Chr9:81772391-81773167 (+)
C57BL/6NJ	ENSMUSG00215015079	lncRNA gene	Chr13:70328565-70329364 (+)
C57BL/6NJ	ENSMUSG00215028663	lncRNA gene	Chr16:28003928-28004703 (+)
C57BL/6NJ	ENSMUSG00215037836	lncRNA gene	Chr17:49775311-49776086 (-)
C57BL/6NJ	ENSMUSG00215051580	lncRNA gene	Chr4:132049950-132050722 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210009757	lncRNA gene	Chr13:69836435-69837234 (+)
CBA/J	ENSMUSG00210023786	lncRNA gene	Chr10:27098494-27099269 (+)
CBA/J	ENSMUSG00210034401	lncRNA gene	ChrX:130837240-130838015 (+)
CBA/J	ENSMUSG00210002224	lncRNA gene	Chr1:8409821-8410596 (+)
CBA/J	ENSMUSG00210040995	lncRNA gene	Chr16:28176460-28177235 (+)
CBA/J	ENSMUSG00210022057	lncRNA gene	Chr18:6998851-6999626 (-)
CBA/J	ENSMUSG00210017639	lncRNA gene	Chr7:42919963-42920738 (+)
CBA/J	ENSMUSG00210010201	lncRNA gene	Chr12:47867441-47868216 (-)
CBA/J	ENSMUSG00210017360	lncRNA gene	Chr6:124025741-124026516 (+)
DBA/2J	ENSMUSG00185020353	lncRNA gene	Chr16:28091919-28092694 (+)
DBA/2J	ENSMUSG00185015459	lncRNA gene	Chr12:49812896-49813671 (-)
DBA/2J	ENSMUSG00185008356	lncRNA gene	Chr10:27251182-27251957 (+)
DBA/2J	ENSMUSG00185029408	lncRNA gene	Chr7:46803003-46803778 (+)
DBA/2J	ENSMUSG00185047287	lncRNA gene	Chr6:124726016-124726791 (+)
DBA/2J	ENSMUSG00185046910	lncRNA gene	ChrX:145658726-145659501 (+)
DBA/2J	ENSMUSG00185027419	lncRNA gene	Chr3:123404576-123405351 (+)
DBA/2J	ENSMUSG00185032138	lncRNA gene	Chr18:7008560-7009335 (-)
DBA/2J	ENSMUSG00185018551	lncRNA gene	Chr13:73527988-73528787 (+)
FVB/NJ	ENSMUSG00205008535	lncRNA gene	Chr3:121770948-121771723 (+)
FVB/NJ	ENSMUSG00205028391	lncRNA gene	Chr16:28099402-28100177 (+)
FVB/NJ	ENSMUSG00205027122	lncRNA gene	Chr13:69220571-69221370 (+)
FVB/NJ	ENSMUSG00205039428	lncRNA gene	Chr11:3560067-3560843 (-)
FVB/NJ	ENSMUSG00205011238	lncRNA gene	Chr10:27228167-27228942 (+)
FVB/NJ	ENSMUSG00205031776	lncRNA gene	ChrX:129356727-129357502 (+)
FVB/NJ	ENSMUSG00205005406	lncRNA gene	Chr9:82076382-82077158 (+)
FVB/NJ	ENSMUSG00205001715	lncRNA gene	Chr7:42601731-42602506 (+)
FVB/NJ	ENSMUSG00205039024	lncRNA gene	Chr18:6787750-6788525 (-)
FVB/NJ	ENSMUSG00205002490	lncRNA gene	Chr8:35038964-35039733 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230047372	lncRNA gene	Chr2:157733044-157733818 (-)
LP/J	ENSMUSG00230010608	lncRNA gene	Chr9:81990609-81991385 (+)
LP/J	ENSMUSG00230013055	lncRNA gene	Chr10:29019214-29019989 (+)
LP/J	ENSMUSG00230004734	lncRNA gene	Chr11:13150163-13150938 (-)
LP/J	ENSMUSG00230036772	lncRNA gene	Chr13:74986071-74986846 (-)
LP/J	ENSMUSG00230036843	lncRNA gene	Chr13:75442491-75443266 (-)
LP/J	ENSMUSG00230028100	lncRNA gene	Chr13:83446652-83447451 (+)
LP/J	ENSMUSG00230034259	lncRNA gene	Chr16:30660706-30661481 (+)
LP/J	ENSMUSG00230051187	lncRNA gene	Chr6:88922085-88922857 (-)
LP/J	ENSMUSG00230046123	lncRNA gene	Chr6:125923159-125923934 (+)
LP/J	ENSMUSG00230014713	lncRNA gene	ChrX:152449743-152450518 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225034592	lncRNA gene	Chr10:33278205-33278980 (+)
NZO/HlLtJ	ENSMUSG00225035816	lncRNA gene	Chr18:58095303-58096075 (-)
NZO/HlLtJ	ENSMUSG00225001379	lncRNA gene	Chr2:143105729-143106504 (+)
NZO/HlLtJ	ENSMUSG00225033422	lncRNA gene	Chr11:15166171-15166946 (-)
NZO/HlLtJ	ENSMUSG00225017094	lncRNA gene	Chr9:82201078-82201854 (+)
NZO/HlLtJ	ENSMUSG00225021299	lncRNA gene	Chr7:50540034-50540809 (+)
NZO/HlLtJ	ENSMUSG00225040609	lncRNA gene	Chr16:33895906-33896681 (+)
NZO/HlLtJ	ENSMUSG00225028414	lncRNA gene	Chr13:75959142-75959941 (+)
NZO/HlLtJ	ENSMUSG00225004286	lncRNA gene	Chr3:127856631-127857406 (+)
NZO/HlLtJ	ENSMUSG00225026482	lncRNA gene	Chr11:6780364-6781141 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56577
  

Sequences &
Gene Models

• All Sequences
  109

• Ensembl
  ENSMUSG00000120784 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120784	Ensembl Gene Model | MGI Sequence Detail	804	C57BL/6J
transcript	ENSMUST00000245789	Ensembl | MGI Sequence Detail	804	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56577:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120359	Chr13:74757344-74757356 (+)	-6 bp