Gm56570 Gene Detail

Summary

• Symbol
  Gm56570
• Name
  predicted gene, 56570

• Feature Type
  lncRNA gene
• IDs
  MGI:7337054
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:58363472-58365356 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337054	lncRNA gene	Chr13:58363472-58365356 (+)
129S1/SvImJ	ENSMUSG00200017107	lncRNA gene	Chr13:55246116-55247537 (+)
A/J	ENSMUSG00195045519	lncRNA gene	Chr13:54722357-54723778 (+)
AKR/J	ENSMUSG00220044295	lncRNA gene	Chr13:54259364-54260785 (+)
BALB/cJ	ENSMUSG00180016429	lncRNA gene	Chr13:54976673-54978094 (+)
C3H/HeJ	ENSMUSG00175042578	lncRNA gene	Chr13:54762772-54764193 (+)
C57BL/6NJ	ENSMUSG00215040064	lncRNA gene	Chr13:54770375-54771796 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040858	lncRNA gene	Chr13:55145151-55146586 (+)
CBA/J	ENSMUSG00210039644	lncRNA gene	Chr13:54967683-54969104 (+)
DBA/2J	ENSMUSG00185017124	lncRNA gene	Chr13:55799934-55801355 (+)
FVB/NJ	ENSMUSG00205043162	lncRNA gene	Chr13:54594928-54596349 (+)
JF1/MsJ	ENSUMUG00000036954	lncRNA gene	Chr13:55173738-55175242 (+)
LP/J	ENSMUSG00230034868	lncRNA gene	Chr13:65160671-65162096 (+)
NOD/ShiLtJ	ENSMUSG00190039407	lncRNA gene	Chr13:54823735-54825156 (+)
NZO/HlLtJ	ENSMUSG00225035108	lncRNA gene	Chr13:58866899-58868320 (+)
PWK/PhJ	ENSLUMG00010025336	lncRNA gene	Chr13:54108573-54110052 (+)
SPRET/EiJ	ENSMSPG00010042681	lncRNA gene	Chr13:54475654-54477111 (+)
WSB/EiJ	ENSIUOG00005025414	lncRNA gene	Chr13:54294315-54295744 (+)

Homology

• Gene Tree
  Gm56570
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000119985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119985	Ensembl Gene Model | MGI Sequence Detail	1885	C57BL/6J
transcript	ENSMUST00000240933	Ensembl | MGI Sequence Detail	1885	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56570:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120068	Chr13:58362742-58362748 (+)	-727 bp
Tssr120069	Chr13:58363504-58363533 (+)	47 bp