Gm56560 Gene Detail

Summary

• Symbol
  Gm56560
• Name
  predicted gene, 56560

• Feature Type
  lncRNA gene
• IDs
  MGI:7337034
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:91555104-91555457 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337034	lncRNA gene	Chr12:91555104-91555457 (+)
129S1/SvImJ	ENSMUSG00200017741	lncRNA gene	Chr12:83342244-83342469 (+)
A/J	ENSMUSG00195035194	lncRNA gene	Chr12:85958546-85958771 (+)
AKR/J	ENSMUSG00220017784	lncRNA gene	Chr12:83669926-83670151 (+)
BALB/cJ	ENSMUSG00180016224	lncRNA gene	Chr12:85031075-85031300 (+)
C3H/HeJ	ENSMUSG00175039980	lncRNA gene	Chr12:87729480-87729705 (+)
C57BL/6NJ	ENSMUSG00215021509	lncRNA gene	Chr12:84318013-84318238 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006368	lncRNA gene	Chr12:84111144-84111369 (+)
CBA/J	ENSMUSG00210018806	lncRNA gene	Chr12:84703643-84703868 (+)
DBA/2J	ENSMUSG00185003050	lncRNA gene	Chr12:86550942-86551167 (+)
FVB/NJ	ENSMUSG00205000662	lncRNA gene	Chr12:83922425-83922650 (+)
JF1/MsJ	ENSUMUG00000026227	lncRNA gene	Chr12:91221543-91221765 (+)
LP/J	ENSMUSG00230005074	lncRNA gene	Chr12:93613371-93613596 (+)
NOD/ShiLtJ	ENSMUSG00190005382	lncRNA gene	Chr12:101420889-101421110 (-)
NZO/HlLtJ	ENSMUSG00225034240	lncRNA gene	Chr12:95381729-95381954 (+)
PWK/PhJ	ENSLUMG00010003526	lncRNA gene	Chr12:84679901-84680123 (+)
SPRET/EiJ	ENSMSPG00010001211	lncRNA gene	Chr12:87038286-87038516 (+)
WSB/EiJ	ENSIUOG00005002255	lncRNA gene	Chr12:83699543-83699767 (+)

Homology

• Gene Tree
  Gm56560
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120869 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120869	Ensembl Gene Model | MGI Sequence Detail	354	C57BL/6J
transcript	ENSMUST00000246214	Ensembl | MGI Sequence Detail	354	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56560:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114590	Chr12:91555252-91555267 (+)	156 bp
Tssr114591	Chr12:91555275-91555293 (+)	180 bp
Tssr114592	Chr12:91555324-91555337 (+)	227 bp