Gm56558 Gene Detail

Summary

• Symbol
  Gm56558
• Name
  predicted gene, 56558

• Feature Type
  lncRNA gene
• IDs
  MGI:7337030
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:86471841-86517132 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1320 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337030	lncRNA gene	Chr12:86471841-86517132 (-)
129S1/SvImJ	ENSMUSG00200051101	lncRNA gene	Chr12:78487133-78532090 (-)
A/J	ENSMUSG00195035569	lncRNA gene	Chr12:81106802-81151769 (-)
AKR/J	ENSMUSG00220049508	lncRNA gene	Chr12:78902728-78947686 (-)
BALB/cJ	ENSMUSG00180027173	lncRNA gene	Chr12:80144518-80189483 (-)
C3H/HeJ	ENSMUSG00175041053	lncRNA gene	Chr12:83237565-83282524 (-)
C57BL/6NJ	ENSMUSG00215046957	lncRNA gene	Chr12:79450968-79495935 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031905	lncRNA gene	Chr12:79420802-79465738 (-)
CBA/J	ENSMUSG00210046299	lncRNA gene	Chr12:79650692-79695645 (-)
DBA/2J	ENSMUSG00185003089	lncRNA gene	Chr12:81507954-81552913 (-)
FVB/NJ	ENSMUSG00205042732	lncRNA gene	Chr12:79319561-79364522 (-)
JF1/MsJ	ENSUMUG00000050150	lncRNA gene	Chr12:85501724-85546919 (-)
LP/J	ENSMUSG00230045746	lncRNA gene	Chr12:88570106-88615062 (-)
NOD/ShiLtJ	ENSMUSG00190047514	lncRNA gene	Chr12:78707701-78752670 (-)
NZO/HlLtJ	ENSMUSG00225052656	lncRNA gene	Chr12:90607250-90652206 (-)
PWK/PhJ	ENSLUMG00010030748	lncRNA gene	Chr12:79521839-79566841 (-)
SPRET/EiJ	ENSMSPG00010001204	lncRNA gene	Chr12:81337013-81380822 (-)
WSB/EiJ	ENSIUOG00005045679	lncRNA gene	Chr12:79372246-79417238 (-)

Homology

• Gene Tree
  Gm56558
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  28
• Gene trapped
  28
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000121169 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121169	Ensembl Gene Model | MGI Sequence Detail	45292	C57BL/6J
transcript	ENSMUST00000337295	Ensembl | MGI Sequence Detail	1429	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56558:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117120	Chr12:86516810-86516831 (-)	311 bp
Tssr117119	Chr12:86516788-86516800 (-)	338 bp
Tssr117118	Chr12:86516764-86516781 (-)	359 bp
Tssr117117	Chr12:86516752-86516763 (-)	374 bp