Gm56556 Gene Detail

Summary

• Symbol
  Gm56556
• Name
  predicted gene, 56556

• Feature Type
  lncRNA gene
• IDs
  MGI:7337026
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:91661764-91662509 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337026	lncRNA gene	Chr12:91661764-91662509 (+)
129S1/SvImJ	ENSMUSG00200017794	lncRNA gene	Chr12:83448763-83449500 (+)
A/J	ENSMUSG00195036219	lncRNA gene	Chr12:86065080-86065818 (+)
AKR/J	ENSMUSG00220018096	lncRNA gene	Chr12:83776477-83777214 (+)
BALB/cJ	ENSMUSG00180015617	lncRNA gene	Chr12:85137651-85138388 (+)
C3H/HeJ	ENSMUSG00175038469	lncRNA gene	Chr12:87836269-87837007 (+)
C57BL/6NJ	ENSMUSG00215018182	lncRNA gene	Chr12:84424568-84425305 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006394	lncRNA gene	Chr12:84214894-84215621 (+)
CBA/J	ENSMUSG00210018880	lncRNA gene	Chr12:84810181-84810917 (+)
DBA/2J	ENSMUSG00185003019	lncRNA gene	Chr12:86657465-86658203 (+)
FVB/NJ	ENSMUSG00205000766	lncRNA gene	Chr12:84029020-84029757 (+)
JF1/MsJ	ENSUMUG00000025070	lncRNA gene	Chr12:91331836-91332563 (+)
LP/J	ENSMUSG00230005100	lncRNA gene	Chr12:93719902-93720640 (+)
NOD/ShiLtJ	ENSMUSG00190005416	lncRNA gene	Chr12:101317168-101317896 (-)
NZO/HlLtJ	ENSMUSG00225034278	lncRNA gene	Chr12:95488270-95489006 (+)
PWK/PhJ	ENSLUMG00010003470	lncRNA gene	Chr12:84805103-84805834 (+)
SPRET/EiJ	ENSMSPG00010001219	lncRNA gene	Chr12:87139153-87139874 (+)
WSB/EiJ	ENSIUOG00005002239	lncRNA gene	Chr12:83813259-83813987 (+)

Homology

• Gene Tree
  Gm56556
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120572 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120572	Ensembl Gene Model | MGI Sequence Detail	746	C57BL/6J
transcript	ENSMUST00000244260	Ensembl | MGI Sequence Detail	746	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56556:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114596	Chr12:91661796-91661816 (+)	42 bp