Gm56555 Gene Detail

Summary

• Symbol
  Gm56555
• Name
  predicted gene, 56555

• Feature Type
  lncRNA gene
• IDs
  MGI:7337024
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:8622123-8638094 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337024	lncRNA gene	Chr12:8622123-8638094 (+)
129S1/SvImJ	ENSMUSG00200046390	lncRNA gene	Chr6:91999055-92002312 (-)
129S1/SvImJ	ENSMUSG00200024270	lncRNA gene	Chr12:5593203-5609145 (+)
A/J	ENSMUSG00195017514	lncRNA gene	Chr12:5650857-5651378 (+)
AKR/J	ENSMUSG00220031815	lncRNA gene	Chr12:5666509-5682448 (+)
AKR/J	ENSMUSG00220038110	lncRNA gene	Chr6:90605966-90609223 (-)
BALB/cJ	ENSMUSG00180015152	lncRNA gene	Chr12:5643384-5643905 (+)
C3H/HeJ	ENSMUSG00175027091	lncRNA gene	Chr6:85334765-85338022 (+)
C3H/HeJ	ENSMUSG00175009561	lncRNA gene	Chr12:5623383-5639322 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047641	lncRNA gene	Chr6:91885723-91888980 (-)
CBA/J	ENSMUSG00210013597	lncRNA gene	Chr12:5654154-5670093 (+)
DBA/2J	ENSMUSG00185021628	lncRNA gene	Chr12:5596966-5612905 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000035975	lncRNA gene	Chr12:5567887-5568135 (+)
LP/J	ENSMUSG00230014028	lncRNA gene	Chr6:93553729-93556986 (-)
LP/J	ENSMUSG00230012967	lncRNA gene	Chr12:7426893-7442832 (+)
NOD/ShiLtJ	ENSMUSG00190007996	lncRNA gene	Chr12:6841142-6857081 (+)
NZO/HlLtJ	ENSMUSG00225019639	lncRNA gene	Chr12:9506138-9522077 (+)
NZO/HlLtJ	ENSMUSG00225040700	lncRNA gene	Chr6:95557846-95561103 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010005233	lncRNA gene	Chr12:5929427-5929675 (+)
WSB/EiJ	ENSIUOG00005002466	lncRNA gene	Chr12:5631229-5647167 (+)
WSB/EiJ	ENSIUOG00005043428	lncRNA gene	Chr17:19913578-19930626 (+)

Homology

• Gene Tree
  Gm56555
  

Expression

• Literature Summary
  1

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000121137 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121137	Ensembl Gene Model | MGI Sequence Detail	15972	C57BL/6J
transcript	ENSMUST00000344481	Ensembl | MGI Sequence Detail	3752	Not Applicable

References

• Summaries
  All 2

  Developmental Gene Expression 1
• Earliest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Gm56555:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112726	Chr12:8622152-8622166 (+)	36 bp