Gm56554 Gene Detail

Summary

• Symbol
  Gm56554
• Name
  predicted gene, 56554

• Feature Type
  lncRNA gene
• IDs
  MGI:7337022
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:55437054-55445582 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  292 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337022	lncRNA gene	Chr12:55437054-55445582 (-)
129S1/SvImJ	ENSMUSG00200031253	lncRNA gene	Chr12:47353447-47354066 (-)
A/J	ENSMUSG00195019466	lncRNA gene	Chr12:49920206-49920825 (-)
AKR/J	ENSMUSG00220028050	lncRNA gene	Chr12:47938551-47939170 (-)
BALB/cJ	ENSMUSG00180006151	lncRNA gene	Chr12:48941156-48941775 (-)
C3H/HeJ	ENSMUSG00175017194	lncRNA gene	Chr12:51982261-51982880 (-)
C57BL/6NJ	ENSMUSG00215017359	lncRNA gene	Chr12:48287711-48288330 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009165	lncRNA gene	Chr12:48361433-48362053 (-)
CBA/J	ENSMUSG00210009975	lncRNA gene	Chr12:48456541-48457160 (-)
DBA/2J	ENSMUSG00185001187	lncRNA gene	Chr12:50401947-50402566 (-)
FVB/NJ	ENSMUSG00205014296	lncRNA gene	Chr12:48249019-48249638 (-)
JF1/MsJ	ENSUMUG00000010847	lncRNA gene	Chr12:54496867-54497487 (-)
LP/J	ENSMUSG00230016378	lncRNA gene	Chr12:57430417-57431036 (-)
NOD/ShiLtJ	ENSMUSG00190017179	lncRNA gene	Chr12:47450370-47450989 (-)
NZO/HlLtJ	ENSMUSG00225041072	lncRNA gene	Chr12:59573336-59573955 (-)
PWK/PhJ	ENSLUMG00010016672	lncRNA gene	Chr12:48534363-48534983 (-)
SPRET/EiJ	ENSMSPG00010016603	lncRNA gene	Chr12:49959795-49960415 (-)
WSB/EiJ	ENSIUOG00005003740	lncRNA gene	Chr12:48294514-48295133 (-)

Homology

• Gene Tree
  Gm56554
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121126 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121126	Ensembl Gene Model | MGI Sequence Detail	8529	C57BL/6J
transcript	ENSMUST00000247220	Ensembl | MGI Sequence Detail	725	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm56554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116340	Chr12:55445462-55445529 (-)	86 bp