Gm56549 Gene Detail

Summary

• Symbol
  Gm56549
• Name
  predicted gene, 56549

• Feature Type
  lncRNA gene
• IDs
  MGI:7337012
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:118265272-118327315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337012	lncRNA gene	Chr12:118265272-118327315 (+)
129S1/SvImJ	ENSMUSG00200028142	lncRNA gene	Chr12:110643226-110705230 (+)
A/J	ENSMUSG00195010345	lncRNA gene	Chr12:113321673-113379382 (+)
AKR/J	ENSMUSG00220040037	lncRNA gene	Chr12:110421918-110483933 (+)
BALB/cJ	ENSMUSG00180006485	lncRNA gene	Chr12:113139265-113201212 (+)
C3H/HeJ	ENSMUSG00175002238	lncRNA gene	Chr12:114215847-114277852 (+)
C57BL/6NJ	ENSMUSG00215051033	lncRNA gene	Chr12:111136611-111198565 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041152	lncRNA gene	Chr12:111140517-111197942 (+)
CBA/J	ENSMUSG00210038481	lncRNA gene	Chr12:111498426-111560430 (+)
DBA/2J	ENSMUSG00185014912	lncRNA gene	Chr12:113996390-114058400 (+)
FVB/NJ	ENSMUSG00205005233	lncRNA gene	Chr12:112512548-112574512 (+)
JF1/MsJ	ENSUMUG00000030619	lncRNA gene	Chr12:118268906-118326311 (+)
LP/J	ENSMUSG00230045921	lncRNA gene	Chr12:120361225-120423174 (+)
NOD/ShiLtJ	ENSMUSG00190029803	lncRNA gene	Chr12:110006553-110068962 (+)
NZO/HlLtJ	ENSMUSG00225044080	lncRNA gene	Chr12:122183432-122245394 (+)
PWK/PhJ	ENSLUMG00010004153	lncRNA gene	Chr12:111357704-111415007 (+)
SPRET/EiJ	ENSMSPG00010011879	lncRNA gene	Chr12:114108744-114109076 (-)
WSB/EiJ	ENSIUOG00005041317	lncRNA gene	Chr12:110830419-110892397 (+)

Homology

• Gene Tree
  Gm56549
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120574 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120574	Ensembl Gene Model | MGI Sequence Detail	62044	C57BL/6J
transcript	ENSMUST00000244437	Ensembl | MGI Sequence Detail	1127	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56549:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115559	Chr12:118265355-118265383 (+)	97 bp
Tssr115560	Chr12:118280323-118280324 (+)	15,052 bp