Gm56548 Gene Detail

Summary

• Symbol
  Gm56548
• Name
  predicted gene, 56548

• Feature Type
  lncRNA gene
• IDs
  MGI:7337010
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:83679323-83680611 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337010	lncRNA gene	Chr12:83679323-83680611 (+)
129S1/SvImJ	ENSMUSG00200051564	lncRNA gene	Chr12:75686786-75688067 (+)
A/J	ENSMUSG00195034238	lncRNA gene	Chr12:78304394-78305675 (+)
AKR/J	ENSMUSG00220049572	lncRNA gene	Chr12:76099822-76101103 (+)
BALB/cJ	ENSMUSG00180024729	lncRNA gene	Chr12:77348362-77349643 (+)
C3H/HeJ	ENSMUSG00175045249	lncRNA gene	Chr12:80436263-80437544 (+)
C57BL/6NJ	ENSMUSG00215047333	lncRNA gene	Chr12:76653916-76655197 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032451	lncRNA gene	Chr12:76593940-76595224 (+)
CBA/J	ENSMUSG00210046817	lncRNA gene	Chr12:76850476-76851757 (+)
DBA/2J	ENSMUSG00185043009	lncRNA gene	Chr12:78706984-78708265 (+)
FVB/NJ	ENSMUSG00205043813	lncRNA gene	Chr12:76517888-76519169 (+)
JF1/MsJ	ENSUMUG00000048987	lncRNA gene	Chr12:82699973-82701257 (+)
LP/J	ENSMUSG00230047153	lncRNA gene	Chr12:85769512-85770793 (+)
NOD/ShiLtJ	ENSMUSG00190049716	lncRNA gene	Chr12:75906885-75908166 (+)
NZO/HlLtJ	ENSMUSG00225053455	lncRNA gene	Chr12:87809780-87811061 (+)
PWK/PhJ	ENSLUMG00010029805	lncRNA gene	Chr12:76702667-76703946 (+)
SPRET/EiJ	ENSMSPG00010020847	lncRNA gene	Chr12:78511184-78512467 (+)
WSB/EiJ	ENSIUOG00005047011	lncRNA gene	Chr12:76535430-76536711 (+)

Homology

• Gene Tree
  Gm56548
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120994 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120994	Ensembl Gene Model | MGI Sequence Detail	1289	C57BL/6J
transcript	ENSMUST00000246798	Ensembl | MGI Sequence Detail	1289	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56548:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114262	Chr12:83679347-83679374 (+)	38 bp