Gm56547 Gene Detail

Summary

• Symbol
  Gm56547
• Name
  predicted gene, 56547

• Feature Type
  lncRNA gene
• IDs
  MGI:7337008
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:78957700-78991589 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1096 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337008	lncRNA gene	Chr12:78957700-78991589 (+)
129S1/SvImJ	ENSMUSG00200033517	lncRNA gene	Chr12:70922039-70922752 (+)
A/J	ENSMUSG00195034313	lncRNA gene	Chr12:73621185-73621898 (+)
AKR/J	ENSMUSG00220049498	lncRNA gene	Chr12:71401191-71401904 (+)
BALB/cJ	ENSMUSG00180024273	lncRNA gene	Chr12:72594259-72594972 (+)
C3H/HeJ	ENSMUSG00175042588	lncRNA gene	Chr12:75753580-75754293 (+)
C57BL/6NJ	ENSMUSG00215046275	lncRNA gene	Chr12:71958159-71958872 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033877	lncRNA gene	Chr12:71894737-71895450 (+)
CBA/J	ENSMUSG00210045830	lncRNA gene	Chr12:72167969-72168682 (+)
DBA/2J	ENSMUSG00185043063	lncRNA gene	Chr12:74028570-74029283 (+)
FVB/NJ	ENSMUSG00205042935	lncRNA gene	Chr12:71770098-71770811 (+)
JF1/MsJ	ENSUMUG00000027217	lncRNA gene	Chr12:78023952-78024665 (+)
LP/J	ENSMUSG00230021769	lncRNA gene	Chr12:81040212-81040925 (+)
NOD/ShiLtJ	ENSMUSG00190012711	lncRNA gene	Chr12:71225488-71226201 (+)
NZO/HlLtJ	ENSMUSG00225052416	lncRNA gene	Chr12:83099282-83099995 (+)
PWK/PhJ	ENSLUMG00010029506	lncRNA gene	Chr12:72040801-72041514 (+)
SPRET/EiJ	ENSMSPG00010021812	lncRNA gene	Chr12:73868180-73868892 (+)
WSB/EiJ	ENSIUOG00005045058	lncRNA gene	Chr12:71853843-71854556 (+)

Homology

• Gene Tree
  Gm56547
  

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000120988 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120988	Ensembl Gene Model | MGI Sequence Detail	33890	C57BL/6J
transcript	ENSMUST00000319171	Ensembl | MGI Sequence Detail	2254	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;