Gm56545 Gene Detail

Summary

• Symbol
  Gm56545
• Name
  predicted gene, 56545

• Feature Type
  lncRNA gene
• IDs
  MGI:7337004
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:84197888-84199067 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337004	lncRNA gene	Chr12:84197888-84199067 (+)
129S1/SvImJ	ENSMUSG00200050446	lncRNA gene	Chr12:76205968-76207039 (+)
A/J	ENSMUSG00195033956	lncRNA gene	Chr12:78823657-78824728 (+)
AKR/J	ENSMUSG00220049660	lncRNA gene	Chr12:76619025-76620096 (+)
BALB/cJ	ENSMUSG00180027493	lncRNA gene	Chr12:77867573-77868644 (+)
C3H/HeJ	ENSMUSG00175042757	lncRNA gene	Chr12:80955457-80956528 (+)
C57BL/6NJ	ENSMUSG00215046206	lncRNA gene	Chr12:77173146-77174217 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033184	lncRNA gene	Chr12:77130171-77131242 (+)
CBA/J	ENSMUSG00210045690	lncRNA gene	Chr12:77369633-77370704 (+)
DBA/2J	ENSMUSG00185043327	lncRNA gene	Chr12:79226143-79227214 (+)
FVB/NJ	ENSMUSG00205044774	lncRNA gene	Chr12:77037055-77038126 (+)
JF1/MsJ	ENSUMUG00000048870	lncRNA gene	Chr12:83229121-83230192 (+)
LP/J	ENSMUSG00230046840	lncRNA gene	Chr12:86288652-86289723 (+)
NOD/ShiLtJ	ENSMUSG00190047337	lncRNA gene	Chr12:76426030-76427101 (+)
NZO/HlLtJ	ENSMUSG00225053258	lncRNA gene	Chr12:88328900-88329971 (+)
PWK/PhJ	ENSLUMG00010030517	lncRNA gene	Chr12:77246815-77247886 (+)
SPRET/EiJ	ENSMSPG00010020461	lncRNA gene	Chr12:79061905-79062981 (+)
WSB/EiJ	ENSIUOG00005044817	lncRNA gene	Chr12:77059950-77061021 (+)

Homology

• Gene Tree
  Gm56545
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120949 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120949	Ensembl Gene Model | MGI Sequence Detail	1180	C57BL/6J
transcript	ENSMUST00000246626	Ensembl | MGI Sequence Detail	1180	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56545:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114323	Chr12:84197993-84198009 (+)	113 bp