Gm56544 Gene Detail

Summary

• Symbol
  Gm56544
• Name
  predicted gene, 56544

• Feature Type
  lncRNA gene
• IDs
  MGI:7337002
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:100798249-100803692 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337002	lncRNA gene	Chr12:100798249-100803692 (-)
129S1/SvImJ	ENSMUSG00200028910	lncRNA gene	Chr12:92566063-92571521 (-)
A/J	ENSMUSG00195021339	lncRNA gene	Chr12:95128021-95133462 (-)
AKR/J	ENSMUSG00220044547	lncRNA gene	Chr12:93034495-93039934 (-)
BALB/cJ	ENSMUSG00180037076	lncRNA gene	Chr12:94284662-94290101 (-)
C3H/HeJ	ENSMUSG00175036453	lncRNA gene	Chr12:96940981-96946424 (-)
C57BL/6NJ	ENSMUSG00215041427	lncRNA gene	Chr12:93596337-93601778 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020680	lncRNA gene	Chr12:93234237-93239677 (-)
CBA/J	ENSMUSG00210014871	lncRNA gene	Chr12:93943499-93948936 (-)
DBA/2J	ENSMUSG00185047622	lncRNA gene	Chr12:95741172-95746618 (-)
FVB/NJ	ENSMUSG00205021866	lncRNA gene	Chr12:93112686-93118140 (-)
JF1/MsJ	ENSUMUG00000024533	lncRNA gene	Chr12:100450614-100456030 (-)
LP/J	ENSMUSG00230031148	lncRNA gene	Chr12:102831164-102836630 (-)
NOD/ShiLtJ	ENSMUSG00190005354	lncRNA gene	Chr12:92198096-92203537 (+)
NZO/HlLtJ	ENSMUSG00225039081	lncRNA gene	Chr12:104554872-104560328 (-)
PWK/PhJ	ENSLUMG00010014026	lncRNA gene	Chr12:93963152-93968567 (-)
SPRET/EiJ	ENSMSPG00010019268	lncRNA gene	Chr12:96386126-96391773 (-)
WSB/EiJ	ENSIUOG00005009721	lncRNA gene	Chr12:92948710-92954172 (-)

Homology

• Gene Tree
  Gm56544
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120898 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120898	Ensembl Gene Model | MGI Sequence Detail	5444	C57BL/6J
transcript	ENSMUST00000246360	Ensembl | MGI Sequence Detail	1157	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117329	Chr12:100803673-100803692 (-)	9 bp